CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0427800-00	Rice	cytosol, mitochondrion, plastid	53.24	77.7
Solyc04g039840.1.1	Tomato	cytosol	20.83	70.31
Solyc10g047430.1.1	Tomato	cytosol	6.02	17.81
OQU80110	Sorghum	extracellular, vacuole	0.93	2.27
KRH24770	Soybean	extracellular, plastid	0.46	0.7
EES00795	Sorghum	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	Gene3D:3.30.70.150	MapMan:35.1	UniProt:A0A1Z5RJI3
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977
GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036376	InterPro:IPR036422	EnsemblPlants:OQU83888	ProteinID:OQU83888	ProteinID:OQU83888.1
PFAM:PF00016	PFAM:PF02788	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf
InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	EnsemblPlantsGene:SORBI_3005G194400	SUPFAM:SSF51649	SUPFAM:SSF54966	UniParc:UPI000B8BA853
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:67806288..67808753

Molecular Weight (calculated)

24445.3 Da

IEP (calculated)

7.083

GRAVY (calculated)

-0.286

Length

216 amino acids

Sequence
(BLAST)

001: MDCREGLMSP QTETKASVGF KADVKDYKLT YYTPEYKTKD TNILAAFRVT PQLGVPPEEV GAAVAAESST RTWTTIWTDG LTSLDYQYIC YVAYPLDLFE
101: EGFVTNMFTS IVGNVLGFKA LHALHLEDLR IPPAYVKTFQ GPPHGIQVER DKLNKYGRPL LGCTIKPKLG LSTKNYGRAC YECLCDGMES KRQRYNLEHF
201: HFIGHSTFTK EVEFLV

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.