CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0899425-00	Rice	cytosol	37.76	50.94
Solyc02g077860.1.1	Tomato	cytosol, extracellular	41.96	46.51
ATMG00280.1	Thale cress	mitochondrion	35.66	46.36
OQU80110	Sorghum	extracellular, vacuole	24.48	39.77
Solyc12g062420.1.1	Tomato	cytosol	20.98	26.32
HORVU2Hr1G084630.3	Barley	mitochondrion	0.0	0.0
OQU83888	Sorghum	cytosol	0.0	0.0
Zm00001d051485_P001	Maize	plastid	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	MapMan:35.1	UniProt:C5XLE8	EnsemblPlants:EES00795
ProteinID:EES00795	ProteinID:EES00795.3	GO:GO:0000287	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0032549	InterPro:IPR036376	PFAM:PF00016	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2
MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	EnsemblPlantsGene:SORBI_3003G172800	SUPFAM:SSF51649
UniParc:UPI0009DC8EAB	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:38364939..38365472

Molecular Weight (calculated)

16020.5 Da

IEP (calculated)

9.718

GRAVY (calculated)

-0.326

Length

143 amino acids

Sequence
(BLAST)

001: MRWRDRFVFC AEAIYKAQAE TGEIKGHYLN ATAGTCEEMI KRAVFAKELG VPIVMHDYLT GGFTANTTLS HYCRDNGLLL HIHRAMHAVI DRQKNHGMHF
101: RVLAKALRMS GGDHIHSGTV VGKLEGEEGR NQQLIKKKGY GLA

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.