Factsheet for Os05t0427800-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030760.1	Barley	cytosol, mitochondrion	24.32	94.74
Solyc04g039840.1.1	Tomato	cytosol	35.81	82.81
HORVU2Hr1G084620.1	Barley	cytosol, mitochondrion, plastid	34.46	68.0
OQU83888	Sorghum	cytosol	77.7	53.24
CAA34004	Rice	cytosol, extracellular, plastid	98.65	30.61
Os10t0356000-00	Rice	plastid	97.97	30.4
Os12t0207600-00	Rice	plastid	95.95	29.77
CDY10606	Canola	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0
KRH24770	Soybean	extracellular, plastid	0.0	0.0
OQU80110	Sorghum	extracellular, vacuole	0.0	0.0
Os01t0791033-00	Rice	cytosol	0.0	0.0
Os01t0899425-00	Rice	cytosol	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
VIT_12s0055g00520.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.30.70.150	MapMan:35.1	ProteinID:BAF17523.1	ProteinID:BAS94132.1
GO:GO:0000287	GO:GO:0000312	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0005975
GO:GO:0006091	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009521	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009767	GO:GO:0009772
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0019684
GO:GO:0045156	GO:GO:0046872	GO:GO:0048038	GO:GO:0051536	GO:GO:0051539	GO:GO:0055114
InterPro:IPR036422	EnsemblPlantsGene:Os05g0427800	EnsemblPlants:Os05t0427800-00	PFAM:PF02788	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2
UniProt:Q0DI00	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	SUPFAM:SSF54966	UniParc:UPI0000E124E4	SEG:seg

Description

Similar to Ribulose bisphosphate carboxylase large chain. (Os05t0427800-00)

Coordinates

chr5:+:20973884..20974330

Molecular Weight (calculated)

16441.4 Da

IEP (calculated)

4.607

GRAVY (calculated)

-0.247

Length

148 amino acids

Sequence
(BLAST)

001: MSPQTETKAS VGFKAGVKDY KLTYYTPEYE TKDTDILAAF RITPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV VGEDNQYIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL RALRLEDLRI PLTYSKTF

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.