CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24770	Soybean	extracellular, plastid	45.31	20.42
CDX98577	Canola	cytosol	70.31	16.79
CDX99944	Canola	cytosol	70.31	16.79
CDY38699	Canola	cytosol	70.31	16.79
CDX92356	Canola	cytosol	54.69	8.16
CDY21199	Canola	cytosol	54.69	8.16
CDY45485	Canola	plastid	6.25	5.56
HORVU0Hr1G024560.2	Barley	plastid	4.69	2.08
CDY38700	Canola	plastid	0.0	0.0
CDY45484	Canola	mitochondrion	0.0	0.0
CDX99945	Canola	plastid	0.0	0.0
GSMUA_AchrUn_...	Banana	plastid	0.0	0.0
CDX98578	Canola	plastid	0.0	0.0
OQU80110	Sorghum	extracellular, vacuole	0.0	0.0
Os05t0427800-00	Rice	cytosol, mitochondrion, plastid	0.0	0.0
Solyc04g039840.1.1	Tomato	cytosol	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
VIT_12s0055g00520.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:CDY10606	EnsemblPlantsGene:GSBRNA2T00032585001	Gene3D:3.20.20.110	GO:A0A078FB40	GO:GO:0000287	GO:GO:0003674
GO:GO:0005488	InterPro:IPR036376	InterPro:RuBisCO_lsu_C_sf	KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MetaCyc:PWY-5532
MetaCyc:PWY-5723	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	ProteinID:CDY10606	ProteinID:CDY10606.1	SUPFAM:SSF51649
UniParc:UPI0004EEE1C3	UniProt:A0A078FB40	MapMan:35.1	:	:	:

Description

BnaC03g70080DBnaC03g70080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB40]

Coordinates

chrLK032004:+:818783..819633

Molecular Weight (calculated)

7424.8 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.439

Length

64 amino acids

Sequence
(BLAST)

1: MSTPPFELYM HVIQARNERR DLAVEGNEII REACKWSPEL AAACEVWKEI TFNFPTIDKL DGQD

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.