Factsheet for VIT_12s0055g00520.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 2
peroxisome 1
plastid 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g03000.t01	Wine grape	cytosol	48.65	29.51
HORVU0Hr1G024560.2	Barley	plastid	13.51	3.47
OQU80110	Sorghum	extracellular, vacuole	5.41	2.27
GSMUA_AchrUn_...	Banana	plastid	5.41	2.06
CDY10606	Canola	cytosol	0.0	0.0
KRH24770	Soybean	extracellular, plastid	0.0	0.0
Os05t0427800-00	Rice	cytosol, mitochondrion, plastid	0.0	0.0
Solyc04g039840.1.1	Tomato	cytosol	0.0	0.0
Solyc10g047430.1.1	Tomato	cytosol	0.0	0.0
VIT_07s0129g00790.t01	Wine grape	cytosol	0.0	0.0
VIT_16s0013g00330.t01	Wine grape	cytosol, extracellular	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:35.2	ProteinID:CCB46142	ProteinID:CCB46142.1	UniProt:F6H1S3
EMBL:FN595228	GO:GO:0000287	GO:GO:0000312	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0009536	GO:GO:0009570
InterPro:IPR036376	InterPro:RuBisCO_lsu_C_sf	SUPFAM:SSF51649	UniParc:UPI0002108117	ArrayExpress:VIT_12s0055g00520	EnsemblPlantsGene:VIT_12s0055g00520
EnsemblPlants:VIT_12s0055g00520.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:13515335..13516707

Molecular Weight (calculated)

4131.0 Da

IEP (calculated)

9.126

GRAVY (calculated)

-0.035

Length

37 amino acids

Sequence
(BLAST)

1: MRGNDQKATF VGKLGVAIIM HDYLIQGFTT NTSMAHY

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.