CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21199	Canola	cytosol	100.0	100.0
CDX98578	Canola	plastid	30.54	97.76
CDX99945	Canola	plastid	30.54	97.04
CDY38700	Canola	plastid	30.54	97.04
CDX98577	Canola	cytosol	57.34	91.79
CDX99944	Canola	cytosol	57.34	91.79
CDY38699	Canola	cytosol	57.34	91.79
CDY45484	Canola	mitochondrion	23.54	73.72
CDY45485	Canola	plastid	10.72	63.89
VIT_07s0129g00790.t01	Wine grape	cytosol	11.42	59.76
CDY10606	Canola	cytosol	8.16	54.69

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	GO:A0A078G720
UniProt:A0A078G720	EnsemblPlants:CDX92356	ProteinID:CDX92356	ProteinID:CDX92356.1	ProteinID:CDY21199.1	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00154096001	InterPro:IPR036376	InterPro:IPR036422	PFAM:PF00016	PFAM:PF02788	ScanProsite:PS00157
PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO	InterPro:RuBisCO_lsu_C
InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649	SUPFAM:SSF54966
UniParc:UPI0004EDE099	SEG:seg	:	:	:	:

Description

BnaA10g13950DBnaA01g34300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G720]

Coordinates

chrLK031872:+:190533..192127

Molecular Weight (calculated)

47351.5 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.273

Length

429 amino acids

Sequence
(BLAST)

001: MTCREGLMSP QTETKASVGF KAGVKEYKLN YYTPEYETKD TDILAAFRVT PQPGVPPEEA GAAVAAESST AYPLDLFEEG SVTNMFTSIV GNVFGFKALA
101: ALRLEDLRIP PAYTKTFQGP PHGIQVERDK LNKYGRPLLG CTIKPKLGLS AKNYGRAVYE CLRGGLDFTK DDENVNSQPF MRWRDRFLFC AEAIYKSQAE
201: TGEIKGHYLN ATAGTCEEMM KRAIFARELG VPIVMHDYLT GGFTANTSLA HYCRDNGLLL HIHRAMHAVI DRQKNHGMHF RVLAKALRLS GGDHVHAGTV
301: VGKLEGDRES TLGFVDLLRD DYVEKDRSRG IFFTQDWVSL PGVLPVASGG IHVWHMPALT EIFGDDSVLQ FGGGTLGHPW GNAPGAVANR GNEIIREACK
401: WSPELAAACE VWKEITFNFP TIDKLDGQD

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.