CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98577	Canola	cytosol	100.0	100.0
CDY38699	Canola	cytosol	100.0	100.0
VIT_16s0013g00330.t01	Wine grape	cytosol, extracellular	33.21	76.72
CDY10606	Canola	cytosol	16.79	70.31
PGSC0003DMT400083063	Potato	cytosol, extracellular	88.81	65.75
CDY45485	Canola	plastid	17.16	63.89
CDX92356	Canola	cytosol	91.79	57.34
CDY21199	Canola	cytosol	91.79	57.34
ATCG00490.1	Thale cress	cytosol	98.13	54.91
Solyc01g007330.2.1	Tomato	plastid	88.81	49.9
CDX98578	Canola	plastid	0.0	0.0
CDX99945	Canola	plastid	0.0	0.0
CDY38700	Canola	plastid	0.0	0.0
CDY45484	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	Gene3D:3.20.20.110	MapMan:35.1	GO:A0A078EGN5	UniProt:A0A078EGN5
EnsemblPlants:CDX99944	ProteinID:CDX99944	ProteinID:CDX99944.1	ProteinID:CDY38699.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00108798001	InterPro:IPR036376	PFAM:PF00016	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2
MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	SUPFAM:SSF51649	UniParc:UPI0004EF3A50

Description

BnaC09g27610DBnaC01g27980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EGN5]

Coordinates

chrLK031915:-:970464..971404

Molecular Weight (calculated)

29670.4 Da

IEP (calculated)

6.443

GRAVY (calculated)

-0.182

Length

268 amino acids

Sequence
(BLAST)

001: MRWRDRFLFC AEAIYKSQAE TGEIKGHYLN ATAGTCEEMM KRAIFARELG VPIVMHDYLT GGFTANTSLA HYCRDNGLLL HIHRAMHAVI DRQKNHGMHF
101: RVLAKALRLS GGDHVHAGTV VGKLEGDRES TLGFVDLLRD DYVEKDRSRG IFFTQDWVSL PGVLPVASGG IHVWHMPALT EIFGDDSVLQ FGGGTLGHPW
201: GNAPGAVANR VALEACVQAR NEGRDLAVEG NEIIREACKW SPELAAACEV WKEITFNFPT IDKLDGQD

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.