Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CAA34004 | Rice | cytosol, extracellular, plastid | 98.51 | 55.56 |
| Os10t0356000-00 | Rice | plastid | 97.77 | 55.14 |
| Os12t0207600-00 | Rice | plastid | 97.77 | 55.14 |
| AGP50763 | Barley | cytosol | 95.54 | 53.65 |
| HORVU0Hr1G029790.1 | Barley | cytosol | 95.54 | 53.21 |
| Os01t0899425-00 | Rice | cytosol | 20.07 | 50.94 |
| Zm00001d000279_P001 | Maize | plastid | 91.08 | 50.72 |
| Os05t0427800-00 | Rice | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os01t0791033-00 | EnsemblPlantsGene:Os01g0791033 | Gene3D:3.20.20.110 | GO:GO:0000287 | GO:GO:0003674 | GO:GO:0005488 |
| InterPro:IPR036376 | InterPro:RuBisCO_lsu_C | InterPro:RuBisCO_lsu_C_sf | KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | PANTHER:PTHR42704 |
| PANTHER:PTHR42704:SF2 | PFAM:PF00016 | ProteinID:BAS74724.1 | SUPFAM:SSF51649 | UniParc:UPI000393B933 | UniProt:A0A0P0V969 |
| MapMan:35.1 | : | : | : | : | : |
Description
Similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit. (Os01t0791033-00)
Coordinates
chr1:-:33533878..33534687
Molecular Weight (calculated)
29729.6 Da
IEP (calculated)
6.570
GRAVY (calculated)
-0.182
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEEANRDRF VFCAEAIYKS QAETGEIKGH YLNATAGTCE EMIKRAVFAR ELGVPIVMHD YLTGGFTANT SLAHYCRDNG LLLHIHRAMH AVIDRQKNHG
101: MHFRVLAKAL RMSGGDHIHA GTVVGKLEGE REMTLGFVDL LRDDFIEKDR ARGIFFTQDW VSMPGVIPVA SGGIHVWHMP ALTEIFGDDS VLQFGGGTLG
201: HPWGNAPGAA ANRVALEACV QARNEGRDLA REGNEIIRSA CKWSPELAAA CEIWKAIKFE FEPVDKLDS
101: MHFRVLAKAL RMSGGDHIHA GTVVGKLEGE REMTLGFVDL LRDDFIEKDR ARGIFFTQDW VSMPGVIPVA SGGIHVWHMP ALTEIFGDDS VLQFGGGTLG
201: HPWGNAPGAA ANRVALEACV QARNEGRDLA REGNEIIRSA CKWSPELAAA CEIWKAIKFE FEPVDKLDS
001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE
Arabidopsis Description
RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.