CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 25047395
plastid: 27992503

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0356000-00	Rice	plastid	99.37	99.37
Os05t0427800-00	Rice	cytosol, mitochondrion, plastid	30.61	98.65
Os12t0207600-00	Rice	plastid	98.53	98.53
Os01t0791033-00	Rice	cytosol	55.56	98.51
AGP50763	Barley	cytosol	96.86	96.45
HORVU0Hr1G029790.1	Barley	cytosol	96.86	95.65
Zm00001d000279_P001	Maize	plastid	94.34	93.17
Os01t0899425-00	Rice	cytosol	17.19	77.36

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	PDB:1WDD	EntrezGene:29141378	Gene3D:3.20.20.110
Gene3D:3.30.70.150	EntrezGene:3131463	PDB:3AXK	PDB:3AXM	UniProt:A0A0K0LQW8	ProteinID:AAS46127.1
ProteinID:AJC99321.1	ProteinID:AJC99410.1	ProteinID:BAA00147.1	EnsemblPlants:CAA34004	EnsemblPlantsGene:CAA34004	ProteinID:CAA34004
ProteinID:CAA34004.1	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853
GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984
GO:GO:0019253	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036376	InterPro:IPR036422	HAMAP:MF_01338
RefSeq:NP_039391.1	UniProt:P0C512	PFAM:PF00016	PFAM:PF02788	ScanProsite:PS00157	PANTHER:PTHR42704
PANTHER:PTHR42704:SF2	MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO	InterPro:RuBisCO_lsuI	InterPro:RuBisCO_lsu_C
InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649	SUPFAM:SSF54966
UniParc:UPI0000133309	RefSeq:YP_009305312.1	SEG:seg	:	:	:

Description

rbcLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/TrEMBL;Acc:A0A0K0LQW8]

Coordinates

chrPt:+:54095..55528

Molecular Weight (calculated)

52884.0 Da

IEP (calculated)

6.672

GRAVY (calculated)

-0.283

Length

477 amino acids

Sequence
(BLAST)

001: MSPQTETKAS VGFKAGVKDY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV VGEDNQYIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL RALRLEDLRI PPTYSKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRACY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFVF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL AHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRM SGGDHIHAGT VVGKLEGERE MTLGFVDLLR DDFIEKDRAR GIFFTQDWVS MPGVIPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAAAN RVALEACVQA RNEGRDLARE GNEIIRSACK WSPELAAACE IWKAIKFEFE PVDKLDS

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.