Factsheet for Zm00001d000279_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 18453340
plastid: 20089766
plastid: 22065420
extracellular: 22192489
plastid: 23198870
plasma membrane: 27341663

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G815453_P01	Maize	cytosol	100.0	100.0
Zm00001d045698_P001	Maize	cytosol	21.74	99.06
HORVU0Hr1G029790.1	Barley	cytosol	94.82	94.82
AGP50763	Barley	cytosol	93.58	94.36
CAA34004	Rice	cytosol, extracellular, plastid	93.17	94.34
Os12t0207600-00	Rice	plastid	91.93	93.08
Os01t0791033-00	Rice	cytosol	50.72	91.08
Zm00001d051485_P001	Maize	plastid	34.16	90.16
Zm00001d037514_P001	Maize	plastid	28.36	79.19
Zm00001d006402_P004	Maize	mitochondrion, plastid	79.5	61.15

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	UniProt:A0A096TUU6
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0015977
GO:GO:0016984	InterPro:IPR036376	InterPro:IPR036422	HAMAP:MF_01338	PFAM:PF00016	PFAM:PF02788
ScanProsite:PS00157	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	InterPro:RuBisCO	InterPro:RuBisCO_lsuI	InterPro:RuBisCO_lsu_C
InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649	SUPFAM:SSF54966
UniParc:UPI000220B6E5	EnsemblPlantsGene:Zm00001d000279	EnsemblPlants:Zm00001d000279_P001	EnsemblPlants:Zm00001d000279_T001	SEG:seg	:

Description

Ribulose bisphosphate carboxylase large chain

Coordinates

chrB73V4_ctg134:+:52981..54432

Molecular Weight (calculated)

53480.9 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.257

Length

483 amino acids

Sequence
(BLAST)

001: MSCREGLMSP QTETKASVGF KAGVKDYKLT YYTPEYETKD TDILAAFRVT PQLGVPPEEA GAAVAAESST GTWTTVWTDG LTSLDRYKGR CYHIEPVPGD
101: PDQYICYVAY PLDLFEEGSV TNMFTSIVGN VFGFKALRAL RLEDLRIPPA YSKTFQGPPH GIQVERDKLN KYGRPLLGCT IKPKLGLSAK NYGRACYECL
201: RGGLDFTKDD ENVNSQPFMR WRDRFVFCAE AIYKAQAETG EIKGHYLNAT AGTCEEMIKR AVFARELGVP IVMHDYLTGG FTANTTLSHY CRDNGLLLHI
301: HRAMHAVIDR QKNHGMHFRV LAKALRMSGG DHIHSGTVVG KLEGEREITL GFVDLLRDDF IEKDRSRGIF FTQDWVSMPG VIPVASGGIH VWHMPALTEI
401: FGDDSVLQFG GGTLGHPWGN APGAAANRVA LEACVQARNE GRDLAREGNE IIKAACKWSA ELAAACEIWK EIKFDGFKAM DTI

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.