CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G030760.1	Barley	cytosol, mitochondrion	7.93	100.0
HORVU0Hr1G026090.1	Barley	cytosol	21.5	99.04
HORVU0Hr1G036870.1	Barley	cytosol, mitochondrion	15.24	98.65
HORVU0Hr1G029790.1	Barley	cytosol	99.37	98.55
HORVU0Hr1G031270.1	Barley	cytosol	99.37	98.55
HORVU7Hr1G091620.1	Barley	cytosol	99.37	98.55
HORVU6Hr1G049260.1	Barley	cytosol	99.37	98.55
HORVU0Hr1G027620.1	Barley	cytosol	39.87	98.45
HORVU5Hr1G064700.7	Barley	cytosol	99.16	98.34
HORVU0Hr1G033030.1	Barley	cytosol	17.75	97.7
CAA34004	Rice	cytosol, extracellular, plastid	96.45	96.86
Os12t0207600-00	Rice	plastid	95.2	95.6
Os01t0791033-00	Rice	cytosol	53.65	95.54
HORVU6Hr1G047870.6	Barley	cytosol	95.82	95.03
HORVU7Hr1G065780.1	Barley	cytosol	15.24	93.59
Zm00001d000279_P001	Maize	plastid	94.36	93.58
HORVU0Hr1G034320.1	Barley	cytosol	16.7	88.89
HORVU2Hr1G084620.1	Barley	cytosol, mitochondrion, plastid	12.94	82.67
HORVU3Hr1G048820.1	Barley	cytosol	15.24	82.02
HORVU0Hr1G024560.2	Barley	plastid	19.62	65.28
HORVU3Hr1G055820.2	Barley	cytosol, plastid	9.39	62.5
HORVU2Hr1G084630.3	Barley	mitochondrion	20.25	57.4

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	EntrezGene:4525187
ProteinID:AAN27989.1	EnsemblPlants:AGP50763	EnsemblPlantsGene:AGP50763	ProteinID:AGP50763	ProteinID:AGP50763.1	ProteinID:AMA20254.1
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977
GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036376	InterPro:IPR036422	ENA:KC912687.1:CDS:54394..55833	HAMAP:MF_01338	PFAM:PF00016
PFAM:PF02788	ScanProsite:PS00157	PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	MetaCyc:PWY-5532	MetaCyc:PWY-5723
GO:Q7YMR6	UniProt:Q7YMR6	InterPro:RuBisCO	InterPro:RuBisCO_lsuI	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf
InterPro:RuBisCO_lsu_N_sf	InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649	SUPFAM:SSF54966	UniParc:UPI000019C4FB
RefSeq:YP_874661.1	SEG:seg	:	:	:	:

Description

rbcLribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

Coordinates

chrPt:+:54394..55833

Molecular Weight (calculated)

53081.3 Da

IEP (calculated)

6.671

GRAVY (calculated)

-0.275

Length

479 amino acids

Sequence
(BLAST)

001: MSPQTETKAG VGFQAGVKDY KLTYYTPEYE TKDTDILAAF RVSPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV AGEDSQWICY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL RALRLEDLRI PPTYSKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRACY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFVF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTTL AHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRM SGGDHIHSGT VVGKLEGERE MTLGFVDLLR DDFIEKDRAR GIFFTQDWVS MPGVIPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAAAN RVALEACVQA RNEGRDLARE GNEIIRAACK WSPELAAACE VWKAIKFEFE PVDTIDKKV

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.