Factsheet for HORVU3Hr1G048820.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G034320.1	Barley	cytosol	76.4	75.56
HORVU7Hr1G065780.1	Barley	cytosol	61.8	70.51
HORVU0Hr1G036870.1	Barley	cytosol, mitochondrion	58.43	70.27
Zm00001d045698_P001	Maize	cytosol	74.16	62.26
HORVU0Hr1G033030.1	Barley	cytosol	58.43	59.77
HORVU0Hr1G026090.1	Barley	cytosol	61.8	52.88
HORVU0Hr1G027620.1	Barley	cytosol	83.15	38.14
Bra041116.1-P	Field mustard	cytosol, mitochondrion	83.15	15.38
AGP50763	Barley	cytosol	82.02	15.24
HORVU0Hr1G029790.1	Barley	cytosol	82.02	15.11
HORVU0Hr1G031270.1	Barley	cytosol	82.02	15.11
HORVU5Hr1G064700.7	Barley	cytosol	82.02	15.11
HORVU6Hr1G049260.1	Barley	cytosol	82.02	15.11
HORVU7Hr1G091620.1	Barley	cytosol	82.02	15.11
HORVU6Hr1G047870.6	Barley	cytosol	78.65	14.49
HORVU2Hr1G084630.3	Barley	mitochondrion	13.48	7.1
HORVU0Hr1G024560.2	Barley	plastid	6.74	4.17
HORVU0Hr1G030760.1	Barley	cytosol, mitochondrion	0.0	0.0
HORVU2Hr1G084620.1	Barley	cytosol, mitochondrion, plastid	0.0	0.0
HORVU3Hr1G055820.2	Barley	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU3Hr1G048820.1	EnsemblPlantsGene:HORVU3Hr1G048820	Gene3D:3.20.20.110	GO:GO:0000287	GO:GO:0003674	GO:GO:0005488
InterPro:IPR036376	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	PANTHER:PTHR42704
PANTHER:PTHR42704:SF2	PFAM:PF00016	SEG:seg	SUPFAM:SSF51649	UniParc:UPI000B486A5F	UniProt:A0A287KZ81
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:338432206..338432703

Molecular Weight (calculated)

8075.6 Da

IEP (calculated)

4.979

GRAVY (calculated)

-0.035

Length

89 amino acids

Sequence
(BLAST)

1: MPGVIPVASG GIHVWHMPAL TEXXXXXXXX XXXXXXLGHP WGNAPGAAAN RVALEACVQA RNEGRDLARE ACEVWKAIKF EFEPVDTID

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.