Factsheet for Zm00001d045698_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G065780.1	Barley	cytosol	68.87	93.59
TraesCS3B01G523500.1	Wheat	cytosol	75.47	88.89
TraesCS2A01G490900.1	Wheat	cytosol	74.53	88.76
TraesCS6A01G291700.1	Wheat	cytosol	73.58	86.67
HORVU3Hr1G048820.1	Barley	cytosol	62.26	74.16
HORVU0Hr1G026090.1	Barley	cytosol	72.64	74.04
HORVU0Hr1G027620.1	Barley	cytosol	89.62	48.97
GRMZM5G815453_P01	Maize	cytosol	99.06	21.74
Zm00001d000279_P001	Maize	plastid	99.06	21.74
Bra041116.1-P	Field mustard	cytosol, mitochondrion	90.57	19.96
Zm00001d006402_P004	Maize	mitochondrion, plastid	100.0	16.88
Zm00001d037514_P001	Maize	plastid	0.0	0.0
Zm00001d051485_P001	Maize	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d045698_P001	EnsemblPlants:Zm00001d045698_T001	EnsemblPlantsGene:Zm00001d045698	Gene3D:3.20.20.110	GO:GO:0000287	GO:GO:0003674
GO:GO:0005488	InterPro:IPR036376	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39
PANTHER:PTHR42704	PANTHER:PTHR42704:SF2	PFAM:PF00016	ProteinID:AQL03006.1	SUPFAM:SSF51649	UniParc:UPI0008451F4F
UniProt:A0A1D6NYD9	MapMan:35.1	:	:	:	:

Description

Ribulose bisphosphate carboxylase large chain

Coordinates

chr9:+:33792140..33792460

Molecular Weight (calculated)

11232.4 Da

IEP (calculated)

5.076

GRAVY (calculated)

0.039

Length

106 amino acids

Sequence
(BLAST)

001: MPGVIPVASG GIHVWHMPAL TEIFGDDSVL QFGGGTLGHP WGNAPGAAAN RVALEACVQA RNEGRDLARE GNEIIKAACK WSAELAAACE IWKEIKFDGF
101: KAMDTI

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.