Factsheet for TraesCS6A01G291700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G490900.1	Wheat	cytosol	92.22	93.26
HORVU7Hr1G065780.1	Barley	cytosol	73.33	84.62
TraesCS3A01G215800.1	Wheat	cytosol	90.0	76.42
Zm00001d045698_P001	Maize	cytosol	86.67	73.58
Bra041116.1-P	Field mustard	cytosol, mitochondrion	94.44	17.67
TraesCS3A01G215900.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G291700.1	EnsemblPlantsGene:TraesCS6A01G291700	Gene3D:3.20.20.110	GO:GO:0000287	GO:GO:0003674	GO:GO:0005488
InterPro:IPR036376	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	PANTHER:PTHR42704
PANTHER:PTHR42704:SF2	PFAM:PF00016	SUPFAM:SSF51649	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:-:523643588..523643910

Molecular Weight (calculated)

9525.4 Da

IEP (calculated)

4.678

GRAVY (calculated)

0.150

Length

90 amino acids

Sequence
(BLAST)

1: MPGVIPVASG GIHVWHMPAL TEIFGDDSVL QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAPA ACEVWKAIKF EFELVDTIDK

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.