Factsheet for Bra041116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G026090.1	Barley	cytosol	21.62	100.0
TraesCS2A01G490900.1	Wheat	cytosol	18.09	97.75
HORVU0Hr1G027620.1	Barley	cytosol	39.29	97.42
TraesCS3B01G523500.1	Wheat	cytosol	18.09	96.67
HORVU7Hr1G065780.1	Barley	cytosol	15.38	94.87
TraesCS6A01G291700.1	Wheat	cytosol	17.67	94.44
Zm00001d045698_P001	Maize	cytosol	19.96	90.57
HORVU7Hr1G091620.1	Barley	cytosol	88.98	88.61
GRMZM5G815453_P01	Maize	cytosol	85.45	85.09
HORVU3Hr1G048820.1	Barley	cytosol	15.38	83.15
Bra028087.1-P	Field mustard	cytosol	82.12	82.46
Zm00001d006402_P004	Maize	mitochondrion, plastid	66.32	50.8

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.1	Gene3D:3.20.20.110	Gene3D:3.30.70.150	EnsemblPlantsGene:Bra041116
EnsemblPlants:Bra041116.1	EnsemblPlants:Bra041116.1-P	ncoils:Coil	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0015977	GO:GO:0016984	InterPro:IPR036376	InterPro:IPR036422
UniProt:M4FJ36	HAMAP:MF_01338	PFAM:PF00016	PFAM:PF02788	ScanProsite:PS00157	PANTHER:PTHR42704
PANTHER:PTHR42704:SF2	InterPro:RuBisCO	InterPro:RuBisCO_lsuI	InterPro:RuBisCO_lsu_C	InterPro:RuBisCO_lsu_C_sf	InterPro:RuBisCO_lsu_N_sf
InterPro:RuBisCO_lsu_fd_N	InterPro:RuBisCo_large_chain_AS	SUPFAM:SSF51649	SUPFAM:SSF54966	UniParc:UPI000253ED29	SEG:seg

Description

ATCG00490 (E=1e-236) RBCL | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.

Coordinates

chrScaffold000609:+:2255..3700

Molecular Weight (calculated)

48453.9 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.239

Length

481 amino acids

Sequence
(BLAST)

001: MSPQTETKAS VGFKAGVKEX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXESSTGT WTTVWTDGLT SLDRYKGRCY HIEPVAGEDN
101: QWICYVAYPL DLFEEGSVTN MFTSIVGNVF GFKALRALRL EDLRIPPTYS KTFQGPPHGI QVERDKLNKY GRPLLGCTIK PKLGLSAKNY GRACYECLRG
201: GLDFTKDDEN VNSQPFMRWR DRFVFCAEAI YKSQAETGEI KGHYLNATAG TCEEMIKRAV FARELGVPIV MHDYLTGGFA ANTTLAHYCR DNGLLLHIHR
301: AMHAVIDRQK NHGMHFRVLA KALRMSGGDH IHSGTVVGKL EGEREMTLGF VDLLRDDFIE KDRARGIFFT QDWVSMPGVI PVASGGIHVW HMPALTEIFG
401: DDSVLQFGGG TLGHPWGNAP GAAANRVALE ACVQARNEGR DLAREGNEII RAACKWSPEL AAACEVWKAI KFEFEPVDTI D

Best Arabidopsis Sequence Match ( ATCG00490.1 )
(BLAST)

001: MSPQTETKAS VGFKAGVKEY KLTYYTPEYE TKDTDILAAF RVTPQPGVPP EEAGAAVAAE SSTGTWTTVW TDGLTSLDRY KGRCYHIEPV PGEETQFIAY
101: VAYPLDLFEE GSVTNMFTSI VGNVFGFKAL AALRLEDLRI PPAYTKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL SAKNYGRAVY ECLRGGLDFT
201: KDDENVNSQP FMRWRDRFLF CAEAIYKSQA ETGEIKGHYL NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL SHYCRDNGLL LHIHRAMHAV
301: IDRQKNHGMH FRVLAKALRL SGGDHIHAGT VVGKLEGDRE STLGFVDLLR DDYVEKDRSR GIFFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL
401: QFGGGTLGHP WGNAPGAVAN RVALEACVQA RNEGRDLAVE GNEIIREACK WSPELAAACE VWKEITFNFP TIDKLDGQE

Arabidopsis Description

RBCLRibulose bisphosphate carboxylase large chain [Source:UniProtKB/Swiss-Prot;Acc:O03042]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.