CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85279
CDX96185
CDY06428
CDY08148
CDY17185
CDY23727
CDY27030
CDY27533
CDY27959
CDY37307
CDY37710
CDY49453
CDY56908

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	CDX85279	AT2G33550.1	21798944
AT5G54580.1	CDY17185	AT2G33550.1	21798944
AT5G54580.1	CDY23727	AT2G33550.1	21798944
AT5G54580.1	CDY27959	AT2G33550.1	21798944
AT5G54580.1	CDY37710	AT2G33550.1	21798944
AT5G54580.1	CDY06428	AT3G21215.1	21798944
AT5G54580.1	CDY27533	AT3G21215.1	21798944
AT5G54580.1	CDY37307	AT3G21215.1	21798944
AT5G54580.1	CDY08148	AT3G49580.1	21798944
AT5G54580.1	CDX96185	AT5G53060.1	21798944
AT5G54580.1	CDY27030	AT5G53060.1	21798944
AT5G54580.1	CDY49453	AT5G53060.1	21798944
AT5G54580.1	CDY56908	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029020.1-P	Field mustard	plastid	100.0	100.0
CDY43820	Canola	plastid	99.35	96.82
CDY64931	Canola	plastid	94.77	94.77
CDY42466	Canola	plastid	94.77	94.77
AT5G54580.1	Thale cress	mitochondrion, plastid	90.2	88.46
KRH55574	Soybean	mitochondrion, plastid	60.78	64.14
KRH25927	Soybean	mitochondrion, plastid	60.13	63.45
Solyc07g063900.2.1	Tomato	plastid	61.44	62.25
PGSC0003DMT400049607	Potato	plastid	63.4	61.78
Zm00001d024675_P001	Maize	mitochondrion	56.21	61.43
EES14515	Sorghum	plastid	56.21	61.43
GSMUA_Achr11P...	Banana	mitochondrion	42.48	60.19
Os08t0139000-02	Rice	mitochondrion	54.9	59.57
GSMUA_Achr8P07380_001	Banana	mitochondrion	51.63	58.52
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	43.79	58.26
TraesCS7B01G207500.1	Wheat	mitochondrion	55.56	55.92
TraesCS7A01G307200.1	Wheat	plastid	54.25	54.25
VIT_08s0007g00070.t01	Wine grape	mitochondrion	43.79	50.38
CDX82066	Canola	cytosol, nucleus, plastid	26.8	42.71
CDX91368	Canola	plastid	39.87	42.07
CDX74955	Canola	plastid	39.22	41.38
CDY09244	Canola	mitochondrion	22.22	32.69
CDY04982	Canola	mitochondrion	30.72	32.19
CDY14089	Canola	mitochondrion	30.07	31.51
CDY06468	Canola	mitochondrion	28.76	29.73
CDY47311	Canola	mitochondrion	27.45	29.17
CDY08312	Canola	mitochondrion	28.76	28.76
CDY31588	Canola	nucleus	14.38	28.21
CDY41969	Canola	cytosol	23.53	28.12
CDY47314	Canola	mitochondrion	27.45	28.0
CDY46213	Canola	nucleus	22.22	27.87
CDY53035	Canola	mitochondrion	27.45	27.81
CDY19230	Canola	mitochondrion	24.18	26.62
CDY31170	Canola	mitochondrion, nucleus	22.88	26.52
CDX83260	Canola	mitochondrion	22.22	25.37
CDY26743	Canola	mitochondrion	23.53	24.32
CDX82164	Canola	mitochondrion	21.57	22.76
CDY42616	Canola	cytosol	22.88	22.29
CDY28003	Canola	plastid	20.91	22.22
CDY51614	Canola	mitochondrion	20.91	22.07
CDY35978	Canola	mitochondrion, plastid	20.26	21.68
CDY12133	Canola	cytosol	22.22	21.52
CDY70933	Canola	nucleus	23.53	21.43
CDY15876	Canola	nucleus	23.53	21.3
CDX90323	Canola	plastid	22.88	21.21
CDY59763	Canola	nucleus	22.88	20.96
CDY72366	Canola	nucleus	22.88	20.47
CDX71276	Canola	nucleus	22.88	20.35
CDX71070	Canola	mitochondrion	19.61	19.74
CDY42426	Canola	mitochondrion	26.8	16.94
CDY65478	Canola	endoplasmic reticulum	22.88	16.83
CDY49123	Canola	mitochondrion	26.8	15.41
CDX73070	Canola	mitochondrion	26.14	14.81
CDX83617	Canola	nucleus	22.22	14.66
CDY48990	Canola	nucleus	22.88	14.4
CDX96526	Canola	mitochondrion	26.14	14.39
CDY13632	Canola	nucleus	22.22	14.23
CDY16825	Canola	plastid	24.18	14.07
CDY52166	Canola	nucleus	22.22	13.99
CDY19589	Canola	plastid	27.45	11.26
CDY02175	Canola	mitochondrion	24.84	11.21
CDX87197	Canola	plastid	23.53	10.94
CDY06395	Canola	nucleus	26.14	10.05
CDY11283	Canola	nucleus	19.61	9.8
CDY34132	Canola	nucleus	12.42	7.45
CDX80910	Canola	nucleus	11.11	6.51

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:A0A078HX60	UniProt:A0A078HX60	EnsemblPlants:CDY43035	ProteinID:CDY43035
ProteinID:CDY43035.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00075862001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253FEF5	SEG:seg

Description

BnaA03g11820DBnaA03g11820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX60]

Coordinates

chrLK032543:-:121295..122800

Molecular Weight (calculated)

16642.7 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.312

Length

153 amino acids

Sequence
(BLAST)

001: MAMAMRLPAI ARAATEMAAA PVGLRRLFCS NATNFSFLSP QANSETPARP QADPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREPYRP QNNMPPSPYG NRY

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.