Factsheet for TraesCS7A01G307200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G287600.2
TraesCS2B01G304400.1
TraesCS2D01G286000.2
TraesCS3A01G441300.1
TraesCS3B01G475300.1
TraesCS3D01G434100.1
TraesCS5A01G443100.1
TraesCS5B01G447700.1
TraesCS5D01G450500.1
TraesCS7A01G287800.1
TraesCS7A01G333800.1
TraesCS7B01G182400.1
TraesCS7B01G245400.2
TraesCS7D01G290200.1
TraesCS7D01G341400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	TraesCS2A01G287600.2	AT2G33550.1	21798944
AT5G54580.1	TraesCS2B01G304400.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS2D01G286000.2	AT2G33550.1	21798944
AT5G54580.1	TraesCS3A01G441300.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS3B01G475300.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS3D01G434100.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS5A01G443100.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS5B01G447700.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS5D01G450500.1	AT2G33550.1	21798944
AT5G54580.1	TraesCS7A01G287800.1	AT3G21215.1	21798944
AT5G54580.1	TraesCS7B01G182400.1	AT3G21215.1	21798944
AT5G54580.1	TraesCS7D01G290200.1	AT3G21215.1	21798944
AT5G54580.1	TraesCS7A01G333800.1	AT5G53060.1	21798944
AT5G54580.1	TraesCS7B01G245400.2	AT5G53060.1	21798944
AT5G54580.1	TraesCS7D01G341400.1	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G207500.1	Wheat	mitochondrion	96.73	97.37
Os08t0139000-02	Rice	mitochondrion	77.12	83.69
Zm00001d024675_P001	Maize	mitochondrion	72.55	79.29
EES14515	Sorghum	plastid	72.55	79.29
Bra002976.1-P	Field mustard	mitochondrion	41.18	60.58
TraesCS2A01G212000.1	Wheat	mitochondrion	54.9	60.0
GSMUA_Achr11P...	Banana	mitochondrion	41.83	59.26
GSMUA_Achr8P07380_001	Banana	mitochondrion	51.63	58.52
KRH25927	Soybean	mitochondrion, plastid	54.9	57.93
KRH55574	Soybean	mitochondrion, plastid	54.9	57.93
Solyc07g063900.2.1	Tomato	plastid	56.21	56.95
PGSC0003DMT400049607	Potato	plastid	56.86	55.41
CDY43035	Canola	plastid	54.25	54.25
CDY42466	Canola	plastid	54.25	54.25
Bra029020.1-P	Field mustard	plastid	54.25	54.25
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	40.52	53.91
CDY64931	Canola	plastid	52.94	52.94
CDY43820	Canola	plastid	54.25	52.87
AT5G54580.1	Thale cress	mitochondrion, plastid	52.94	51.92
VIT_08s0007g00070.t01	Wine grape	mitochondrion	40.52	46.62
TraesCS4A01G100000.1	Wheat	mitochondrion	26.14	38.46
TraesCS4A01G099700.1	Wheat	plastid	35.95	31.98
TraesCS2A01G296100.1	Wheat	mitochondrion	28.1	30.94
TraesCS3A01G534200.1	Wheat	mitochondrion	19.61	27.52
TraesCS1A01G405700.1	Wheat	mitochondrion	18.3	25.23
TraesCS6A01G216500.1	Wheat	nucleus	26.14	24.69
TraesCS3A01G422600.1	Wheat	nucleus	27.45	24.28
TraesCS5A01G015000.1	Wheat	nucleus	26.14	23.53
TraesCS4A01G293000.1	Wheat	plastid	24.84	23.46
TraesCS3A01G418900.1	Wheat	mitochondrion	20.91	21.92
TraesCS3A01G428400.1	Wheat	mitochondrion	26.8	18.14
TraesCS4A01G355700.1	Wheat	nucleus	24.84	18.01
TraesCS7A01G326800.1	Wheat	nucleus	26.8	17.3
TraesCS5A01G460900.1	Wheat	mitochondrion	26.8	13.44
TraesCS2A01G237400.1	Wheat	nucleus	25.49	13.31
TraesCS4A01G288500.1	Wheat	nucleus	22.22	10.73
TraesCS6A01G292000.1	Wheat	plastid	22.22	8.76
TraesCS2A01G176700.1	Wheat	mitochondrion	32.03	6.68

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0080156	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS7A01G307200	EnsemblPlants:TraesCS7A01G307200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:+:433730245..433736952

Molecular Weight (calculated)

16441.5 Da

IEP (calculated)

10.372

GRAVY (calculated)

-0.346

Length

153 amino acids

Sequence
(BLAST)

001: MAAVAARSGL RRMFSIADFA TPNTRMFSIS AFAPPSPPTP PPKADPSPNL FVSGLSKRTT TDGLREAFAK FGEVEHARVV TDRVTGFSKG FGFVRYVSVE
101: DATKGIEGMD GKFLDGWVIF AEYARPRPPP QMGGATPQPQ QSWGTPSGSW GSQ

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.