Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G516500.1 | Wheat | nucleus | 98.58 | 93.69 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 97.16 | 93.61 |
| KXG37189 | Sorghum | nucleus | 80.09 | 84.92 |
| Zm00001d034768_P005 | Maize | nucleus | 81.04 | 83.41 |
| Os03t0836200-03 | Rice | nucleus | 79.15 | 81.46 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 99.53 | 67.31 |
| KRH42209 | Soybean | endoplasmic reticulum | 54.03 | 64.77 |
| PGSC0003DMT400076497 | Potato | nucleus | 62.56 | 64.39 |
| PGSC0003DMT400045627 | Potato | nucleus | 63.98 | 63.08 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 69.67 | 62.03 |
| KRH58335 | Soybean | nucleus | 60.66 | 61.54 |
| Solyc10g047130.1.1 | Tomato | nucleus | 63.03 | 55.65 |
| Bra025205.1-P | Field mustard | nucleus | 60.19 | 54.74 |
| CDX83617 | Canola | nucleus | 60.19 | 54.74 |
| CDY13632 | Canola | nucleus | 60.66 | 53.56 |
| CDY48990 | Canola | nucleus | 61.14 | 53.09 |
| Bra032933.1-P | Field mustard | nucleus | 61.14 | 53.09 |
| CDY52166 | Canola | nucleus | 59.72 | 51.85 |
| AT3G26420.1 | Thale cress | nucleus | 58.29 | 50.2 |
| Solyc01g104840.2.1 | Tomato | nucleus | 50.71 | 47.98 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 63.98 | 47.37 |
| TraesCS4A01G293000.1 | Wheat | plastid | 34.6 | 45.06 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 34.12 | 44.44 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 33.18 | 41.67 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 32.7 | 40.59 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 31.75 | 35.08 |
| TraesCS3A01G422600.1 | Wheat | nucleus | 25.59 | 31.21 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 41.71 | 30.03 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 14.22 | 28.85 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 14.69 | 28.44 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 18.01 | 27.34 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 14.22 | 27.03 |
| TraesCS2A01G212000.1 | Wheat | mitochondrion | 17.06 | 25.71 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 17.54 | 25.34 |
| TraesCS7A01G307200.1 | Wheat | plastid | 18.01 | 24.84 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 36.97 | 24.61 |
| TraesCS3A01G428400.1 | Wheat | mitochondrion | 25.12 | 23.45 |
| TraesCS5A01G460900.1 | Wheat | mitochondrion | 31.75 | 21.97 |
| TraesCS4A01G099700.1 | Wheat | plastid | 17.54 | 21.51 |
| TraesCS2A01G176700.1 | Wheat | mitochondrion | 29.86 | 8.59 |
| TraesCS6A01G292000.1 | Wheat | plastid | 15.17 | 8.25 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00343 | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | SUPFAM:SSF57756 |
| EnsemblPlantsGene:TraesCS4A01G355700 | EnsemblPlants:TraesCS4A01G355700.1 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | TIGR:cd12399 | SEG:seg |
Description
No Description!
Coordinates
chr4A:+:629474797..629475953
Molecular Weight (calculated)
22933.8 Da
IEP (calculated)
5.543
GRAVY (calculated)
-1.361
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MADEDEYRCF VGNLSWSTTD ESLKDAFSKY GKVTEAKVVM DKFSGRSRGF AFVTFDEKKA MEEAIEDMNG LDLEGRAITV DKAQPQGVGR DRNGDRDFDR
101: DRGSRGGRDY GGGRAPRGGG GGGDCFKCGK PGHFARECPD GDGGRGDRYG GRDDRYGGGR SDRGGDRSDR GGDRSDRDGD RSERGSDRYS SRSRDGGSGG
201: DRYSCDRSGP Y
101: DRGSRGGRDY GGGRAPRGGG GGGDCFKCGK PGHFARECPD GDGGRGDRYG GRDDRYGGGR SDRGGDRSDR GGDRSDRDGD RSERGSDRYS SRSRDGGSGG
201: DRYSCDRSGP Y
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.