Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G205500.1 | Wheat | plastid | 95.93 | 95.93 |
| TraesCS4B01G204600.1 | Wheat | plastid | 94.77 | 95.32 |
| HORVU4Hr1G059000.4 | Barley | plastid | 94.77 | 84.46 |
| Os03t0278800-00 | Rice | plastid | 80.23 | 79.77 |
| EER92461 | Sorghum | plastid | 76.74 | 78.11 |
| Zm00001d028661_P001 | Maize | plastid | 75.0 | 77.71 |
| VIT_08s0040g03330.t01 | Wine grape | plastid | 57.56 | 70.71 |
| KRG95817 | Soybean | mitochondrion | 54.07 | 66.91 |
| KRH67547 | Soybean | mitochondrion | 52.91 | 65.47 |
| Bra005189.1-P | Field mustard | plastid | 52.33 | 62.5 |
| CDX91368 | Canola | plastid | 52.33 | 62.07 |
| CDX74955 | Canola | plastid | 51.74 | 61.38 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 61.63 | 60.23 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 47.67 | 59.42 |
| PGSC0003DMT400028726 | Potato | nucleus | 45.93 | 54.11 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 51.74 | 53.29 |
| TraesCS2A01G212000.1 | Wheat | mitochondrion | 33.72 | 41.43 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 22.67 | 37.5 |
| TraesCS7A01G307200.1 | Wheat | plastid | 31.98 | 35.95 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 27.91 | 34.53 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 20.93 | 32.43 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 20.35 | 32.11 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 22.09 | 26.03 |
| TraesCS3A01G422600.1 | Wheat | nucleus | 25.58 | 25.43 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 23.26 | 24.69 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 22.67 | 22.94 |
| TraesCS4A01G293000.1 | Wheat | plastid | 21.51 | 22.84 |
| TraesCS3A01G428400.1 | Wheat | mitochondrion | 25.0 | 19.03 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 21.51 | 17.54 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 22.09 | 16.03 |
| TraesCS5A01G460900.1 | Wheat | mitochondrion | 26.16 | 14.75 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 22.09 | 12.97 |
| TraesCS6A01G292000.1 | Wheat | plastid | 25.58 | 11.34 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 20.35 | 11.04 |
| TraesCS2A01G176700.1 | Wheat | mitochondrion | 28.49 | 6.68 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G099700.1 | EnsemblPlantsGene:TraesCS4A01G099700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45392 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4A:-:112586992..112588110
Molecular Weight (calculated)
18307.7 Da
IEP (calculated)
10.111
GRAVY (calculated)
-0.217
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSSSASTL LRRLLGSTPL SSSRSSVLRA AFCSSSSSGP SPTLPPPSTI SGDDTEVANV PPLTTPKLFV SGLSRLTTDE KLKSAFAPFG QLLEVKVITD
101: RVSGRSKGFG FVRYASLQEA ETARQEMNAK FLDGWVIFVD PAKQREQKPA PQPDTASSHT GFTINKTVGW CG
101: RVSGRSKGFG FVRYASLQEA ETARQEMNAK FLDGWVIFVD PAKQREQKPA PQPDTASSHT GFTINKTVGW CG
001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.