Factsheet for Os03t0278800-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G205500.1	Wheat	plastid	80.92	81.4
TraesCS4B01G204600.1	Wheat	plastid	79.77	80.7
TraesCS4A01G099700.1	Wheat	plastid	79.77	80.23
Zm00001d028661_P001	Maize	plastid	72.83	75.9
EER92461	Sorghum	plastid	73.99	75.74
HORVU4Hr1G059000.4	Barley	plastid	80.35	72.02
VIT_08s0040g03330.t01	Wine grape	plastid	57.23	70.71
KRG95817	Soybean	mitochondrion	54.34	67.63
KRH67547	Soybean	mitochondrion	53.18	66.19
Solyc10g084630.1.1	Tomato	mitochondrion	49.71	62.32
GSMUA_Achr6P15340_001	Banana	plastid	63.01	61.93
Bra005189.1-P	Field mustard	plastid	50.87	61.11
CDX91368	Canola	plastid	50.87	60.69
CDX74955	Canola	plastid	50.29	60.0
PGSC0003DMT400028726	Potato	nucleus	48.55	57.53
AT2G37510.2	Thale cress	mitochondrion, plastid	51.45	53.29
Os07t0549800-01	Rice	mitochondrion	32.95	42.86
Os01t0502800-01	Rice	mitochondrion	12.72	41.51
Os08t0139000-02	Rice	mitochondrion	32.95	40.43
Os04t0414300-00	Rice	mitochondrion	27.17	34.31
Os01t0916600-01	Rice	mitochondrion	25.43	29.33
Os01t0974701-01	Rice	mitochondrion	19.65	29.31
Os04t0583800-01	Rice	plastid	16.18	23.73
Os12t0632000-01	Rice	nucleus	21.97	23.46
Os03t0836200-03	Rice	nucleus	24.86	20.98
Os07t0602600-01	Rice	mitochondrion	25.43	18.49
Os12t0502200-01	Rice	mitochondrion	27.17	18.22
Os03t0670700-01	Rice	nucleus	19.65	17.35
Os10t0321700-01	Rice	mitochondrion	26.01	14.2
Os03t0681900-01	Rice	nucleus	20.81	11.69
Os02t0730800-01	Rice	plastid	26.59	11.53

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4332430	ProteinID:ABF95288.1	ProteinID:BAF11643.1	ProteinID:BAS83549.1
ProteinID:EAZ26461.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0278800	EnsemblPlants:Os03t0278800-00	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45392	UniProt:Q10N84	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0000DB41B6	RefSeq:XP_015630477.1	SEG:seg	:	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os03t0278800-00)

Coordinates

chr3:-:9489475..9490784

Molecular Weight (calculated)

18434.8 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.208

Length

173 amino acids

Sequence
(BLAST)

001: MALSSSLLHR LLRGSTPVSS SSAAASSILR ATFCSSSSSA PLPTESPLSS VFGDGAEVSN VPPLTAPKLF ISGLSRLTTD EKLKNAFAPF GQLLEAKVIT
101: DRISGRSKGF GFVRYATLEE AENARQEMNA KFLDGWVIFV DPAKPRQQKP APRPDTDSSH TGFTTNKTVG WCG

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.