Factsheet for VIT_08s0040g03330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95817	Soybean	mitochondrion	73.57	74.1
KRH67547	Soybean	mitochondrion	71.43	71.94
Solyc10g084630.1.1	Tomato	mitochondrion	69.29	70.29
Bra005189.1-P	Field mustard	plastid	72.14	70.14
CDX74955	Canola	plastid	70.71	68.28
CDX91368	Canola	plastid	70.71	68.28
PGSC0003DMT400028726	Potato	nucleus	63.57	60.96
GSMUA_Achr6P15340_001	Banana	plastid	74.29	59.09
AT2G37510.2	Thale cress	mitochondrion, plastid	70.0	58.68
TraesCS4B01G204600.1	Wheat	plastid	70.71	57.89
TraesCS4D01G205500.1	Wheat	plastid	70.71	57.56
TraesCS4A01G099700.1	Wheat	plastid	70.71	57.56
Zm00001d028661_P001	Maize	plastid	67.86	57.23
Os03t0278800-00	Rice	plastid	70.71	57.23
EER92461	Sorghum	plastid	68.57	56.8
HORVU4Hr1G059000.4	Barley	plastid	70.71	51.3
VIT_19s0014g04770.t01	Wine grape	mitochondrion	47.14	48.89
VIT_08s0007g02860.t01	Wine grape	mitochondrion	40.0	42.11
VIT_08s0007g00070.t01	Wine grape	mitochondrion	37.14	39.1
VIT_06s0080g00870.t01	Wine grape	plastid	30.71	38.74
VIT_06s0004g04260.t01	Wine grape	mitochondrion	27.86	36.79
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	35.0	32.24
VIT_05s0094g00380.t01	Wine grape	mitochondrion	22.86	29.09
VIT_17s0053g00760.t01	Wine grape	plastid	30.0	26.42
VIT_03s0063g02610.t01	Wine grape	nucleus	30.0	25.93
VIT_12s0059g01210.t01	Wine grape	mitochondrion	25.71	25.71
VIT_17s0000g07330.t01	Wine grape	plastid	32.86	16.61
VIT_18s0166g00180.t01	Wine grape	mitochondrion	31.43	15.44
VIT_08s0007g04870.t01	Wine grape	cytosol	25.0	14.11
VIT_13s0019g05080.t01	Wine grape	nucleus	23.57	11.87
VIT_13s0106g00500.t01	Wine grape	plastid	33.57	11.49

Protein Annotations

EntrezGene:100258495	wikigene:100258495	Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CBI32608	ProteinID:CBI32608.3
UniProt:D7TQ88	EMBL:FN596008	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100258495	wikigene:LOC100258495	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
TIGR:TC54351	UniParc:UPI00015CA436	ArrayExpress:VIT_08s0040g03330	EnsemblPlantsGene:VIT_08s0040g03330	EnsemblPlants:VIT_08s0040g03330.t01	unigene:Vvi.3673
RefSeq:XP_002274178	RefSeq:XP_002274178.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:14294258..14298210

Molecular Weight (calculated)

15501.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.425

Length

140 amino acids

Sequence
(BLAST)

001: MAFASSFRRV LTGSSTILQS QFSPARFNST VTSPKLFVSG LSRLTTDEKL KEAFSPFGQL LEAKVITDRV SGRSKGFGFV TYTTLEEAEK AREGMNAKFL
101: DGWVIFVDPA KPREPRPPPQ QEPESSETGF RTNKTIGWCG

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.