Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G204600.1 | Wheat | plastid | 98.26 | 98.83 |
| TraesCS4A01G099700.1 | Wheat | plastid | 95.93 | 95.93 |
| HORVU4Hr1G059000.4 | Barley | plastid | 95.93 | 85.49 |
| Os03t0278800-00 | Rice | plastid | 81.4 | 80.92 |
| Zm00001d028661_P001 | Maize | plastid | 76.16 | 78.92 |
| EER92461 | Sorghum | plastid | 77.33 | 78.7 |
| VIT_08s0040g03330.t01 | Wine grape | plastid | 57.56 | 70.71 |
| KRG95817 | Soybean | mitochondrion | 54.65 | 67.63 |
| KRH67547 | Soybean | mitochondrion | 54.07 | 66.91 |
| Bra005189.1-P | Field mustard | plastid | 52.33 | 62.5 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 63.95 | 62.5 |
| CDX91368 | Canola | plastid | 52.33 | 62.07 |
| CDX74955 | Canola | plastid | 51.74 | 61.38 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 48.84 | 60.87 |
| PGSC0003DMT400028726 | Potato | nucleus | 47.09 | 55.48 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 52.91 | 54.49 |
| TraesCS2D01G217900.1 | Wheat | mitochondrion | 34.3 | 42.14 |
| TraesCS4D01G205200.1 | Wheat | mitochondrion | 22.67 | 37.5 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 29.07 | 35.97 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 19.19 | 30.28 |
| TraesCS3D01G417800.1 | Wheat | plastid | 28.49 | 27.84 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 24.42 | 27.1 |
| TraesCS5D01G020900.1 | Wheat | plastid | 23.84 | 23.56 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 22.09 | 22.89 |
| TraesCS3D01G424100.1 | Wheat | mitochondrion | 25.58 | 20.09 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 22.09 | 17.12 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 22.09 | 16.52 |
| TraesCS5D01G473100.1 | Wheat | mitochondrion | 27.33 | 15.36 |
| TraesCS2D01G184200.1 | Wheat | mitochondrion | 28.49 | 15.08 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 22.09 | 12.97 |
| TraesCS6D01G273200.1 | Wheat | plastid | 26.74 | 11.79 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 20.35 | 11.01 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G205500.1 | EnsemblPlantsGene:TraesCS4D01G205500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR45392 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4D:+:353040674..353041812
Molecular Weight (calculated)
18324.7 Da
IEP (calculated)
9.794
GRAVY (calculated)
-0.183
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSSSSSTL LRRLLGSTPL SSSRSSVLRA AFCSSSSAAP SPTLPPPSTI FGDDTEVANV PPLTTPKLFV SGLSRLTTDE KLKSAFAPFG QLLEAKVITD
101: RVSGRSKGFG FVRYASLEEA ETARQEMNAK FLDGWVIFVD PAKQREQKPA PQPDTASSHA GFTINKTVGW CG
101: RVSGRSKGFG FVRYASLEEA ETARQEMNAK FLDGWVIFVD PAKQREQKPA PQPDTASSHA GFTINKTVGW CG
001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.