Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G293000.1 | Wheat | plastid | 96.99 | 99.38 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 96.39 | 98.16 |
| Solyc10g051390.1.1 | Tomato | nucleus | 50.6 | 71.19 |
| TraesCS5D01G020900.1 | Wheat | plastid | 73.49 | 70.11 |
| Solyc10g051380.1.1 | Tomato | nucleus | 54.22 | 69.23 |
| CDY59763 | Canola | nucleus | 68.67 | 68.26 |
| CDY70933 | Canola | nucleus | 68.67 | 67.86 |
| Bra031210.1-P | Field mustard | nucleus | 68.67 | 67.86 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 54.22 | 67.67 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 68.67 | 67.06 |
| Bra001972.1-P | Field mustard | nucleus | 65.66 | 66.46 |
| PGSC0003DMT400084266 | Potato | extracellular | 64.46 | 66.46 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 63.25 | 66.46 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 62.05 | 66.45 |
| CDY72366 | Canola | nucleus | 68.07 | 66.08 |
| Bra030284.1-P | Field mustard | nucleus | 66.87 | 66.07 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 64.46 | 66.05 |
| CDY15876 | Canola | nucleus | 66.87 | 65.68 |
| KRH29453 | Soybean | nucleus | 54.82 | 65.0 |
| CDX90323 | Canola | plastid | 64.46 | 64.85 |
| Bra010693.1-P | Field mustard | nucleus | 64.46 | 64.85 |
| PGSC0003DMT400001879 | Potato | cytosol | 68.67 | 64.77 |
| AT2G21660.1 | Thale cress | nucleus | 68.67 | 64.77 |
| KRH29452 | Soybean | nucleus | 60.84 | 64.74 |
| Solyc01g109660.2.1 | Tomato | extracellular | 68.07 | 64.57 |
| AT4G39260.1 | Thale cress | nucleus | 65.66 | 64.5 |
| CDY42616 | Canola | cytosol | 60.84 | 64.33 |
| KRH29451 | Soybean | nucleus | 66.27 | 64.33 |
| Bra011869.1-P | Field mustard | cytosol | 62.05 | 63.58 |
| CDX71276 | Canola | nucleus | 65.66 | 63.37 |
| PGSC0003DMT400083014 | Potato | nucleus | 63.25 | 63.25 |
| PGSC0003DMT400084258 | Potato | nucleus | 63.25 | 63.25 |
| PGSC0003DMT400084290 | Potato | nucleus | 63.25 | 63.25 |
| CDY46213 | Canola | nucleus | 46.39 | 63.11 |
| CDY41969 | Canola | cytosol | 48.19 | 62.5 |
| KRH29454 | Soybean | nucleus | 62.65 | 61.18 |
| KRH51528 | Soybean | nucleus | 65.66 | 59.89 |
| CDY12133 | Canola | cytosol | 56.63 | 59.49 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 55.42 | 59.35 |
| KRH60842 | Soybean | mitochondrion | 63.25 | 56.76 |
| TraesCS3D01G417800.1 | Wheat | plastid | 42.17 | 39.77 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 45.18 | 33.78 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 45.18 | 32.61 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 21.08 | 32.11 |
| TraesCS3D01G424100.1 | Wheat | mitochondrion | 40.96 | 31.05 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 23.49 | 28.06 |
| TraesCS4D01G205200.1 | Wheat | mitochondrion | 17.47 | 27.88 |
| TraesCS2D01G217900.1 | Wheat | mitochondrion | 23.49 | 27.86 |
| TraesCS5D01G473100.1 | Wheat | mitochondrion | 49.4 | 26.8 |
| TraesCS2D01G184200.1 | Wheat | mitochondrion | 50.6 | 25.85 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 43.98 | 24.91 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 45.18 | 23.58 |
| TraesCS4D01G205500.1 | Wheat | plastid | 22.89 | 22.09 |
| TraesCS6D01G273200.1 | Wheat | plastid | 20.48 | 8.72 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G018500.1 | EnsemblPlantsGene:TraesCS4D01G018500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44202 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12399 |
| MapMan:16.7.2 | MapMan:16.12.5.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:7911059..7911681
Molecular Weight (calculated)
16113.1 Da
IEP (calculated)
5.219
GRAVY (calculated)
-0.742
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVEYRCFV GGLAWATDDQ SLQNAFSKYG DVIDSKIITD RETGRSRGFG FVTFASDEAM RQAIEAMNGQ DLDGRNITVN EAQSRRSGGG GGGFGGGGGG
101: GGYGGQRREG GGGGGYGGGG GGYGGGRSGG GGGYGSREGG GGYGSGGGGG GYGGSRGGSG GGNWRE
101: GGYGGQRREG GGGGGYGGGG GGYGGGRSGG GGGYGSREGG GGYGSGGGGG GYGGSRGGSG GGNWRE
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.