Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42616 | Canola | cytosol | 95.31 | 77.71 |
| Bra011869.1-P | Field mustard | cytosol | 94.53 | 74.69 |
| CDX90323 | Canola | plastid | 92.19 | 71.52 |
| CDY46213 | Canola | nucleus | 66.41 | 69.67 |
| CDY12133 | Canola | cytosol | 84.38 | 68.35 |
| AT4G39260.1 | Thale cress | nucleus | 88.28 | 66.86 |
| CDY15876 | Canola | nucleus | 83.59 | 63.31 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 65.62 | 63.16 |
| Solyc10g051390.1.1 | Tomato | nucleus | 57.81 | 62.71 |
| CDY72366 | Canola | nucleus | 82.03 | 61.4 |
| Solyc10g051380.1.1 | Tomato | nucleus | 61.72 | 60.77 |
| CDY70933 | Canola | nucleus | 77.34 | 58.93 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 74.22 | 58.64 |
| KRH29453 | Soybean | nucleus | 64.06 | 58.57 |
| CDY59763 | Canola | nucleus | 75.78 | 58.08 |
| PGSC0003DMT400084290 | Potato | nucleus | 72.66 | 56.02 |
| PGSC0003DMT400084258 | Potato | nucleus | 72.66 | 56.02 |
| PGSC0003DMT400083014 | Potato | nucleus | 72.66 | 56.02 |
| CDX71276 | Canola | nucleus | 75.0 | 55.81 |
| KRH29452 | Soybean | nucleus | 67.97 | 55.77 |
| Zm00001d041246_P001 | Maize | nucleus | 62.5 | 55.17 |
| PGSC0003DMT400084266 | Potato | extracellular | 68.75 | 54.66 |
| Os12t0632000-01 | Rice | nucleus | 68.75 | 54.32 |
| KRH29451 | Soybean | nucleus | 71.88 | 53.8 |
| Solyc01g109660.2.1 | Tomato | extracellular | 73.44 | 53.71 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 66.41 | 53.46 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 69.53 | 53.29 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 64.06 | 52.9 |
| PGSC0003DMT400001879 | Potato | cytosol | 72.66 | 52.84 |
| Zm00001d031168_P001 | Maize | plastid | 63.28 | 52.26 |
| KRH51528 | Soybean | nucleus | 74.22 | 52.2 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 64.06 | 51.9 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 65.62 | 51.85 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 64.84 | 51.23 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 64.84 | 51.23 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 67.97 | 51.18 |
| KXG37870 | Sorghum | nucleus | 67.97 | 51.18 |
| TraesCS5D01G020900.1 | Wheat | plastid | 68.75 | 50.57 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 60.94 | 50.32 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 66.41 | 50.0 |
| KRH29454 | Soybean | nucleus | 66.41 | 50.0 |
| EES16438 | Sorghum | nucleus | 64.06 | 49.7 |
| TraesCS4A01G293000.1 | Wheat | plastid | 62.5 | 49.38 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 62.5 | 49.08 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 62.5 | 48.19 |
| KRH60842 | Soybean | mitochondrion | 67.97 | 47.03 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 35.94 | 46.46 |
| CDY47311 | Canola | mitochondrion | 47.66 | 42.36 |
| CDY47314 | Canola | mitochondrion | 48.44 | 41.33 |
| CDY53035 | Canola | mitochondrion | 48.44 | 41.06 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 55.47 | 41.04 |
| CDY06468 | Canola | mitochondrion | 44.53 | 38.51 |
| CDY08312 | Canola | mitochondrion | 44.53 | 37.25 |
| Os03t0670700-01 | Rice | nucleus | 57.03 | 37.24 |
| CDY19230 | Canola | mitochondrion | 35.16 | 32.37 |
| CDY09244 | Canola | mitochondrion | 24.22 | 29.81 |
| CDY26743 | Canola | mitochondrion | 34.38 | 29.73 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 21.88 | 29.17 |
| CDX82164 | Canola | mitochondrion | 32.81 | 28.97 |
| CDY51614 | Canola | mitochondrion | 32.03 | 28.28 |
| CDY31588 | Canola | nucleus | 16.41 | 26.92 |
| CDX91368 | Canola | plastid | 29.69 | 26.21 |
| CDX74955 | Canola | plastid | 29.69 | 26.21 |
| CDY52166 | Canola | nucleus | 46.88 | 24.69 |
| CDY28003 | Canola | plastid | 27.34 | 24.31 |
| CDY48990 | Canola | nucleus | 46.09 | 24.28 |
| CDX83617 | Canola | nucleus | 43.75 | 24.14 |
| CDY14089 | Canola | mitochondrion | 27.34 | 23.97 |
| CDY04982 | Canola | mitochondrion | 27.34 | 23.97 |
| CDY64931 | Canola | plastid | 28.12 | 23.53 |
| CDY42466 | Canola | plastid | 28.12 | 23.53 |
| CDY43035 | Canola | plastid | 28.12 | 23.53 |
| CDY13632 | Canola | nucleus | 43.75 | 23.43 |
| CDY42426 | Canola | mitochondrion | 43.75 | 23.14 |
| CDY43820 | Canola | plastid | 28.12 | 22.93 |
| CDY35978 | Canola | mitochondrion, plastid | 24.22 | 21.68 |
| CDX96526 | Canola | mitochondrion | 46.88 | 21.58 |
| CDX73070 | Canola | mitochondrion | 45.31 | 21.48 |
| CDY49123 | Canola | mitochondrion | 44.53 | 21.43 |
| CDY16825 | Canola | plastid | 43.75 | 21.29 |
| CDY31170 | Canola | mitochondrion, nucleus | 18.75 | 18.18 |
| CDX83260 | Canola | mitochondrion | 18.75 | 17.91 |
| CDY65478 | Canola | endoplasmic reticulum | 28.91 | 17.79 |
| CDX71070 | Canola | mitochondrion | 20.31 | 17.11 |
| CDX87197 | Canola | plastid | 42.97 | 16.72 |
| CDY11283 | Canola | nucleus | 39.84 | 16.67 |
| CDY02175 | Canola | mitochondrion | 42.97 | 16.22 |
| CDY34132 | Canola | nucleus | 31.25 | 15.69 |
| CDX80910 | Canola | nucleus | 26.56 | 13.03 |
| CDY19589 | Canola | plastid | 23.44 | 8.04 |
| CDY06395 | Canola | nucleus | 23.44 | 7.54 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:A0A078HX59 | UniProt:A0A078HX59 | EnsemblPlants:CDY41969 | ProteinID:CDY41969 |
| ProteinID:CDY41969.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00073961001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45429 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEFFB5 | SEG:seg |
Description
BnaA01g05410DBnaA01g05410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX59]
Coordinates
chrLK032511:-:106212..107264
Molecular Weight (calculated)
13006.8 Da
IEP (calculated)
4.609
GRAVY (calculated)
-0.719
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAEVEYRCF VGGLAWATGD AELERTFSQF GEVIDSKIIN DRETGRSRGF GFVTFKDEKS MRDAIDEMNG KELDGRTITV NEAQSRGSGG GGGRGGGGGY
101: GGGGGRREGG GYGGGDGGYG GGSGGGGW
101: GGGGGRREGG GYGGGDGGYG GGSGGGGW
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.