Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60650.2 | Thale cress | nucleus | 72.94 | 63.7 |
| VIT_13s0019g05080.t01 | Wine grape | nucleus | 55.29 | 50.72 |
| KRG90774 | Soybean | nucleus | 54.51 | 49.82 |
| KRH35987 | Soybean | nucleus | 51.76 | 45.67 |
| PGSC0003DMT400043581 | Potato | nucleus | 48.24 | 45.39 |
| CDX80910 | Canola | nucleus | 44.31 | 43.3 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 51.37 | 42.12 |
| CDY11283 | Canola | nucleus | 50.2 | 41.83 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 36.47 | 41.52 |
| Solyc03g071560.2.1 | Tomato | nucleus | 48.24 | 39.17 |
| Zm00001d033511_P002 | Maize | cytosol, mitochondrion, nucleus | 45.1 | 38.72 |
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 46.27 | 37.94 |
| Os03t0681900-01 | Rice | nucleus | 45.49 | 37.66 |
| KXG37841 | Sorghum | nucleus | 46.27 | 37.34 |
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 41.57 | 36.18 |
| PGSC0003DMT400079815 | Potato | nucleus | 45.1 | 36.16 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 44.71 | 35.96 |
| Solyc11g008210.1.1 | Tomato | nucleus | 41.57 | 35.93 |
| OQU88590 | Sorghum | nucleus | 42.35 | 35.88 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 44.71 | 35.85 |
| TraesCS4B01G026400.1 | Wheat | nucleus | 44.71 | 35.74 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 40.78 | 35.49 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 40.78 | 35.49 |
| TraesCS2B01G259400.1 | Wheat | nucleus | 40.39 | 35.15 |
| CDY41969 | Canola | cytosol | 15.69 | 31.25 |
| CDX83617 | Canola | nucleus | 27.84 | 30.6 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 41.18 | 30.43 |
| CDY13632 | Canola | nucleus | 28.24 | 30.13 |
| CDY42616 | Canola | cytosol | 18.43 | 29.94 |
| CDY72366 | Canola | nucleus | 20.0 | 29.82 |
| CDX71276 | Canola | nucleus | 20.0 | 29.65 |
| CDY52166 | Canola | nucleus | 28.24 | 29.63 |
| CDY15876 | Canola | nucleus | 19.61 | 29.59 |
| CDY48990 | Canola | nucleus | 27.45 | 28.81 |
| CDX90323 | Canola | plastid | 18.43 | 28.48 |
| CDY12133 | Canola | cytosol | 17.65 | 28.48 |
| CDY59763 | Canola | nucleus | 18.43 | 28.14 |
| CDY46213 | Canola | nucleus | 13.33 | 27.87 |
| CDY70933 | Canola | nucleus | 18.04 | 27.38 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 41.18 | 27.34 |
| CDY47314 | Canola | mitochondrion | 13.33 | 22.67 |
| CDY53035 | Canola | mitochondrion | 13.33 | 22.52 |
| CDY47311 | Canola | mitochondrion | 12.55 | 22.22 |
| CDY06468 | Canola | mitochondrion | 12.55 | 21.62 |
| CDY09244 | Canola | mitochondrion | 8.63 | 21.15 |
| CDY08312 | Canola | mitochondrion | 12.55 | 20.91 |
| CDY19230 | Canola | mitochondrion | 11.37 | 20.86 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 7.84 | 20.83 |
| CDY31588 | Canola | nucleus | 6.27 | 20.51 |
| CDY26743 | Canola | mitochondrion | 11.76 | 20.27 |
| CDX82164 | Canola | mitochondrion | 10.2 | 17.93 |
| CDY51614 | Canola | mitochondrion | 10.2 | 17.93 |
| CDY16825 | Canola | plastid | 18.04 | 17.49 |
| CDY14089 | Canola | mitochondrion | 9.8 | 17.12 |
| CDY35978 | Canola | mitochondrion, plastid | 9.41 | 16.78 |
| CDY28003 | Canola | plastid | 9.41 | 16.67 |
| CDY04982 | Canola | mitochondrion | 9.41 | 16.44 |
| CDY49123 | Canola | mitochondrion | 16.86 | 16.17 |
| CDY42426 | Canola | mitochondrion | 15.29 | 16.12 |
| CDX96526 | Canola | mitochondrion | 17.25 | 15.83 |
| CDX73070 | Canola | mitochondrion | 16.47 | 15.56 |
| CDX91368 | Canola | plastid | 8.24 | 14.48 |
| CDX74955 | Canola | plastid | 8.24 | 14.48 |
| CDY65478 | Canola | endoplasmic reticulum | 11.37 | 13.94 |
| CDY02175 | Canola | mitochondrion | 18.43 | 13.86 |
| CDX87197 | Canola | plastid | 17.65 | 13.68 |
| CDY31170 | Canola | mitochondrion, nucleus | 6.67 | 12.88 |
| CDX83260 | Canola | mitochondrion | 6.67 | 12.69 |
| CDY43035 | Canola | plastid | 7.45 | 12.42 |
| CDY64931 | Canola | plastid | 7.45 | 12.42 |
| CDY42466 | Canola | plastid | 7.45 | 12.42 |
| CDY43820 | Canola | plastid | 7.45 | 12.1 |
| CDX71070 | Canola | mitochondrion | 5.1 | 8.55 |
| CDY19589 | Canola | plastid | 7.84 | 5.36 |
| CDY06395 | Canola | nucleus | 8.24 | 5.28 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:A0A078H945 | UniProt:A0A078H945 | EnsemblPlants:CDY34132 |
| ProteinID:CDY34132 | ProteinID:CDY34132.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016607 | GO:GO:0045892 | GO:GO:0048026 |
| EnsemblPlantsGene:GSBRNA2T00056090001 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR44993 | PANTHER:PTHR44993:SF1 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI0004EE1904 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
BnaC01g28720DGlycine-rich RNA-binding protein RZ1B [Source:Projected from Arabidopsis thaliana (AT1G60650) UniProtKB/Swiss-Prot;Acc:O22703]
Coordinates
chrLK032329:+:259287..261105
Molecular Weight (calculated)
29915.5 Da
IEP (calculated)
7.802
GRAVY (calculated)
-1.387
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDRESDGRI LDNRIFLQYT FHRYRKIIEC QIMVEKDTGR PRGFGFITFN DRRGADDAIK HMHGRELGDR VILVNKPEPK AGGGEDLHEC FKCGGHGHWA
101: RECPSSTGGD RGRYRDPPAM HSRVGEYDGH QDRYGDRDRD RYMDDHRDGG RCSYRDRFEG RDKYETRDLY PVESRYGRPG DRLVSDRYGM PQCHHHLEDE
201: YGRGERGYDR DNRYESDRYG DMGPLRYEGR AYISRSCPYD RPSLAGGRSS SYERC
101: RECPSSTGGD RGRYRDPPAM HSRVGEYDGH QDRYGDRDRD RYMDDHRDGG RCSYRDRFEG RDKYETRDLY PVESRYGRPG DRLVSDRYGM PQCHHHLEDE
201: YGRGERGYDR DNRYESDRYG DMGPLRYEGR AYISRSCPYD RPSLAGGRSS SYERC
001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW
Arabidopsis Description
RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.