CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87197	Canola	plastid	94.68	75.68
CDY02175	Canola	mitochondrion	86.69	67.26
AT5G61030.1	Thale cress	mitochondrion	77.19	65.7
GSMUA_Achr9P07090_001	Banana	mitochondrion	47.15	52.1
CDX82164	Canola	mitochondrion	27.38	49.66
VIT_17s0000g07330.t01	Wine grape	plastid	52.09	49.46
CDY06468	Canola	mitochondrion	27.76	49.32
CDY53035	Canola	mitochondrion	28.14	49.01
CDY47314	Canola	mitochondrion	27.76	48.67
CDY47311	Canola	mitochondrion	26.62	48.61
CDY08312	Canola	mitochondrion	28.14	48.37
CDX73070	Canola	mitochondrion	49.05	47.78
CDY51614	Canola	mitochondrion	26.24	47.59
CDY15876	Canola	nucleus	30.42	47.34
CDY42426	Canola	mitochondrion	43.35	47.11
EES16016	Sorghum	mitochondrion	44.49	46.8
CDX96526	Canola	mitochondrion	49.05	46.4
CDY49123	Canola	mitochondrion	46.77	46.24
CDY72366	Canola	nucleus	30.04	46.2
GSMUA_Achr4P03230_001	Banana	mitochondrion	44.87	46.09
TraesCS3D01G424100.1	Wheat	mitochondrion	38.02	45.66
TraesCS3A01G428400.1	Wheat	mitochondrion	38.78	45.13
CDY26743	Canola	mitochondrion	25.1	44.59
Os12t0502200-01	Rice	mitochondrion	43.73	44.57
TraesCS3B01G465800.1	Wheat	mitochondrion	38.78	44.16
KRH56813	Soybean	mitochondrion	45.63	43.8
CDY41969	Canola	cytosol	21.29	43.75
Zm00001d041750_P001	Maize	mitochondrion	42.97	43.3
KRH03133	Soybean	nucleus	45.25	43.27
CDY59763	Canola	nucleus	27.38	43.11
PGSC0003DMT400064758	Potato	mitochondrion	41.06	43.03
CDY42616	Canola	cytosol	25.48	42.68
Solyc02g066930.2.1	Tomato	nucleus	34.98	42.59
CDX90323	Canola	plastid	26.62	42.42
CDY12133	Canola	cytosol	25.48	42.41
CDY70933	Canola	nucleus	27.0	42.26
CDY46213	Canola	nucleus	19.39	41.8
CDY19230	Canola	mitochondrion	22.05	41.73
HORVU5Hr1G110370.1	Barley	mitochondrion	46.39	41.64
TraesCS5D01G473100.1	Wheat	mitochondrion	47.91	41.18
TraesCS5B01G470700.1	Wheat	mitochondrion	47.91	41.04
CDX71276	Canola	nucleus	26.62	40.7
TraesCS5A01G460900.1	Wheat	mitochondrion	46.77	40.33
Zm00001d023734_P003	Maize	nucleus, plastid	42.59	39.02
Os07t0602600-01	Rice	mitochondrion	34.98	38.66
Os10t0321700-01	Rice	mitochondrion	46.39	38.49
CDY31588	Canola	nucleus	11.03	37.18
TraesCS2B01G203200.1	Wheat	mitochondrion	44.11	36.36
TraesCS2D01G184200.1	Wheat	mitochondrion	44.87	36.31
HORVU3Hr1G094330.2	Barley	mitochondrion	42.21	36.27
Zm00001d022065_P001	Maize	mitochondrion	42.21	36.04
KXG36643	Sorghum	mitochondrion	42.97	35.76
PGSC0003DMT400003685	Potato	nucleus	40.68	35.31
CDY28003	Canola	plastid	19.01	34.72
Solyc02g088790.2.1	Tomato	extracellular, plastid	46.77	32.98
CDY09244	Canola	mitochondrion	12.93	32.69
CDY35978	Canola	mitochondrion, plastid	17.49	32.17
CDY04982	Canola	mitochondrion	17.11	30.82
CDY14089	Canola	mitochondrion	16.73	30.14
CDY65478	Canola	endoplasmic reticulum	23.19	29.33
CDX83260	Canola	mitochondrion	14.45	28.36
CDX91368	Canola	plastid	15.59	28.28
CDX74955	Canola	plastid	15.59	28.28
CDY31170	Canola	mitochondrion, nucleus	14.07	28.03
CDY42466	Canola	plastid	14.83	25.49
CDX82066	Canola	cytosol, nucleus, plastid	9.13	25.0
CDY48990	Canola	nucleus	22.81	24.69
CDX71070	Canola	mitochondrion	14.07	24.34
CDY52166	Canola	nucleus	22.43	24.28
CDY64931	Canola	plastid	14.07	24.18
CDY43035	Canola	plastid	14.07	24.18
CDX83617	Canola	nucleus	21.29	24.14
CDY43820	Canola	plastid	14.07	23.57
CDY13632	Canola	nucleus	21.29	23.43
KRH54698	Soybean	plastid	48.67	18.99
CDY34132	Canola	nucleus	17.49	18.04
CDY11283	Canola	nucleus	20.15	17.32
CDX80910	Canola	nucleus	15.59	15.71
TraesCS2A01G176700.1	Wheat	mitochondrion	41.83	15.01
CDY19589	Canola	plastid	13.31	9.38
CDY06395	Canola	nucleus	13.31	8.79

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:A0A078FQR8	UniProt:A0A078FQR8	EnsemblPlants:CDY16825	ProteinID:CDY16825
ProteinID:CDY16825.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00094710001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE6327	SEG:seg

Description

BnaA09g05570DBnaA09g05570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQR8]

Coordinates

chrLK032067:-:523550..524953

Molecular Weight (calculated)

25794.0 Da

IEP (calculated)

4.508

GRAVY (calculated)

-0.460

Length

263 amino acids

Sequence
(BLAST)

001: MAFLSKFGNI LKQTNANGSL SSPSLFQAMR CMSSSKLFIG GMEYGMNEDS LREAFSKYGE VVETRVILDR ETGRSRGFGF VTFTSTEAAS SAIQALDGQD
101: LHGRIVKVNY AHDRASGGGG YGGGGYGGGY GGGGGYGGGS GGYGGGGAGG YGTSGGYGSS GYGESSTASA AGAVGGYNGS GGYGEGSTAN AGAVGGYGSG
201: NAYGSNNGGF AGENQVGGDN SQFSGENTQF GGGGQSGGEA RFGGMENGAV GDFEDDTDVA KRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.