CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03133	Soybean	nucleus	88.69	88.36
KRG97345	Soybean	mitochondrion	27.37	53.19
TraesCS3A01G428400.1	Wheat	mitochondrion	40.51	49.12
TraesCS3D01G424100.1	Wheat	mitochondrion	39.05	48.86
Os12t0502200-01	Rice	mitochondrion	45.62	48.45
VIT_17s0000g07330.t01	Wine grape	plastid	48.91	48.38
EES16016	Sorghum	mitochondrion	43.8	48.0
TraesCS3B01G465800.1	Wheat	mitochondrion	39.42	46.75
GSMUA_Achr4P03230_001	Banana	mitochondrion	43.07	46.09
Bra035944.1-P	Field mustard	plastid	43.8	45.63
CDY16825	Canola	plastid	43.8	45.63
KRH01278	Soybean	mitochondrion, nucleus, plastid	40.51	45.49
KRH45033	Soybean	nucleus, plastid	40.51	45.31
GSMUA_Achr9P07090_001	Banana	mitochondrion	39.05	44.96
Zm00001d041750_P001	Maize	mitochondrion	42.7	44.83
KRH31570	Soybean	mitochondrion	23.72	44.83
KRH29451	Soybean	nucleus	27.37	43.86
AT5G61030.1	Thale cress	mitochondrion	48.91	43.37
KRH29453	Soybean	nucleus	21.9	42.86
KRH29452	Soybean	nucleus	24.09	42.31
Bra012986.1-P	Field mustard	mitochondrion	46.72	41.97
KRH51528	Soybean	nucleus	27.37	41.21
Zm00001d023734_P003	Maize	nucleus, plastid	43.07	41.12
KRH60842	Soybean	mitochondrion	27.74	41.08
Os07t0602600-01	Rice	mitochondrion	35.4	40.76
KRH29454	Soybean	nucleus	24.82	40.0
TraesCS5B01G470700.1	Wheat	mitochondrion	41.97	37.46
TraesCS5A01G460900.1	Wheat	mitochondrion	41.61	37.38
TraesCS5D01G473100.1	Wheat	mitochondrion	41.61	37.25
HORVU3Hr1G094330.2	Barley	mitochondrion	41.61	37.25
KRH23034	Soybean	mitochondrion	11.68	37.21
CDY02175	Canola	mitochondrion	45.99	37.17
Os10t0321700-01	Rice	mitochondrion	42.7	36.91
HORVU5Hr1G110370.1	Barley	mitochondrion	39.42	36.86
CDX87197	Canola	plastid	44.16	36.78
Zm00001d022065_P001	Maize	mitochondrion	40.51	36.04
TraesCS2D01G184200.1	Wheat	mitochondrion	42.7	36.0
KRH10291	Soybean	nucleus	9.49	35.14
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	12.41	35.05
KXG36643	Sorghum	mitochondrion	40.15	34.81
TraesCS2B01G203200.1	Wheat	mitochondrion	40.51	34.8
KRH67959	Soybean	mitochondrion	16.42	34.62
KRH77758	Soybean	mitochondrion	13.87	33.63
KRH17905	Soybean	cytosol, mitochondrion, nucleus	9.85	32.53
KRH50325	Soybean	vacuole	16.06	31.43
KRH67547	Soybean	mitochondrion	15.69	30.94
KRG95817	Soybean	mitochondrion	15.33	30.22
KRH25927	Soybean	mitochondrion, plastid	15.69	29.66
KRH55574	Soybean	mitochondrion, plastid	14.96	28.28
KRH42209	Soybean	endoplasmic reticulum	17.15	26.7
KRH58335	Soybean	nucleus	18.98	25.0
KRH24829	Soybean	mitochondrion	12.77	23.97
KRH24832	Soybean	endoplasmic reticulum	11.68	22.7
KRG90774	Soybean	nucleus	22.63	22.22
KRH09475	Soybean	plastid	14.6	22.22
KRH54698	Soybean	plastid	50.0	20.33
KRH35987	Soybean	nucleus	19.71	18.69
KRH38934	Soybean	plastid	9.12	16.23
KRH40931	Soybean	mitochondrion	13.14	15.58
TraesCS2A01G176700.1	Wheat	mitochondrion	39.42	14.73
KRG92035	Soybean	plastid	13.87	9.74

Protein Annotations

EntrezGene:100782808	MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02002798	EnsemblPlantsGene:GLYMA_05G020900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1JZI4	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH56813	ProteinID:KRH56813	ProteinID:KRH56813.1	ProteinID:KRH56814.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000233A0E1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:1852829..1856434

Molecular Weight (calculated)

28186.3 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.696

Length

274 amino acids

Sequence
(BLAST)

001: MAFFGRIGNL LRQTASRQVS SELRSSPSFF QAIRSMSSAP STKLFIGGVS YSTDEQSLRE AFSKYGEVVD ARIIMDRETG RSRGFGFITY TSVEEASSAI
101: QALDGQDLHG RPIRVNYANE RPRGYGGGGF GSYGAVGGGG YEGGSSYRGG YGGDNYSRND GSGYGYGGGR YGSGGNYGDS GSGNNYSGGY AGNAGGVGNH
201: ESSTGFASNG YDGSVVDGGV GAGSGTSFAD GYDGSAGSEF GSSGQLDSKA SSKGDEDFGD YRDDNDADDF AKRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.