CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH41057
KRH44644
KRH47009
KRH53532
KRH53667
KRH59736
KRH64261
KRH64403

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	KRH41057	AT2G33550.1	21798944
AT5G54580.1	KRH59736	AT2G33550.1	21798944
AT5G54580.1	KRH44644	AT3G21215.1	21798944
AT5G54580.1	KRH47009	AT3G21215.1	21798944
AT5G54580.1	KRH16959	AT3G49580.1	21798944
AT5G54580.1	KRH53667	AT3G49580.1	21798944
AT5G54580.1	KRH64261	AT3G49580.1	21798944
AT5G54580.1	KRH53532	AT5G53060.1	21798944
AT5G54580.1	KRH64403	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55574	Soybean	mitochondrion, plastid	92.41	92.41
Bra002976.1-P	Field mustard	mitochondrion	46.9	65.38
EES14515	Sorghum	plastid	62.76	65.0
GSMUA_Achr11P...	Banana	mitochondrion	48.28	64.81
Zm00001d024675_P001	Maize	mitochondrion	61.38	63.57
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	49.66	62.61
Os08t0139000-02	Rice	mitochondrion	60.69	62.41
Solyc07g063900.2.1	Tomato	plastid	64.83	62.25
CDY43035	Canola	plastid	63.45	60.13
Bra029020.1-P	Field mustard	plastid	63.45	60.13
AT5G54580.1	Thale cress	mitochondrion, plastid	64.14	59.62
CDY64931	Canola	plastid	62.76	59.48
PGSC0003DMT400049607	Potato	plastid	64.14	59.24
CDY42466	Canola	plastid	62.07	58.82
GSMUA_Achr8P07380_001	Banana	mitochondrion	54.48	58.52
CDY43820	Canola	plastid	62.76	57.96
TraesCS7B01G207500.1	Wheat	mitochondrion	59.31	56.58
TraesCS7A01G307200.1	Wheat	plastid	57.93	54.9
VIT_08s0007g00070.t01	Wine grape	mitochondrion	50.34	54.89
KRG95817	Soybean	mitochondrion	42.07	43.88
KRH67547	Soybean	mitochondrion	42.07	43.88
KRH67959	Soybean	mitochondrion	33.79	37.69
KRH23034	Soybean	mitochondrion	21.38	36.05
KRH10291	Soybean	nucleus	17.24	33.78
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	22.07	32.99
KRH77758	Soybean	mitochondrion	25.52	32.74
KRH09475	Soybean	plastid	37.24	30.0
KRG97345	Soybean	mitochondrion	28.28	29.08
KRH38934	Soybean	plastid	28.97	27.27
KRH17905	Soybean	cytosol, mitochondrion, nucleus	15.17	26.51
KRH31570	Soybean	mitochondrion	25.52	25.52
KRH50325	Soybean	vacuole	22.76	23.57
KRH29453	Soybean	nucleus	22.07	22.86
KRH24832	Soybean	endoplasmic reticulum	21.38	21.99
KRH29452	Soybean	nucleus	22.76	21.15
KRH24829	Soybean	mitochondrion	20.69	20.55
KRH51528	Soybean	nucleus	25.52	20.33
KRH29454	Soybean	nucleus	22.76	19.41
KRH42209	Soybean	endoplasmic reticulum	22.76	18.75
KRH29451	Soybean	nucleus	22.07	18.71
KRH60842	Soybean	mitochondrion	23.45	18.38
KRH01278	Soybean	mitochondrion, nucleus, plastid	30.34	18.03
KRH45033	Soybean	nucleus, plastid	29.66	17.55
KRH58335	Soybean	nucleus	22.76	15.87
KRH56813	Soybean	mitochondrion	29.66	15.69
KRH03133	Soybean	nucleus	29.66	15.64
KRH40931	Soybean	mitochondrion	22.07	13.85
KRG92035	Soybean	plastid	28.97	10.77
KRG90774	Soybean	nucleus	19.31	10.04
KRH35987	Soybean	nucleus	13.79	6.92
KRH54698	Soybean	plastid	24.14	5.19

Protein Annotations

EntrezGene:100789351	MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02007397	EnsemblPlantsGene:GLYMA_12G139200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LSQ9	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH25927	ProteinID:KRH25927	ProteinID:KRH25927.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45392	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233CD20
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:17062727..17066616

Molecular Weight (calculated)

15896.8 Da

IEP (calculated)

10.365

GRAVY (calculated)

-0.457

Length

145 amino acids

Sequence
(BLAST)

001: MATRAAVAAP RVFRRFFCTN SASPSFPFVP TPPPGATPTP TRPTAEPNPN LFVSGLSKRT TTERLREEFA KFGEVVHARV VTDRVSGYSK GFGFVQYATI
101: EEAAKGIEGM DGKFLDGWVI FAEYARPRPP PGQSLNNNSP QYGRQ

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.