Factsheet for Os08t0139000-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0516800-00
Os04t0397500-00
Os06t0342500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	Os02t0516800-00	AT2G33550.1	21798944
AT5G54580.1	Os04t0397500-00	AT2G33550.1	21798944
AT5G54580.1	Os06t0342500-01	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024675_P001	Maize	mitochondrion	80.85	81.43
EES14515	Sorghum	plastid	80.85	81.43
TraesCS7B01G207500.1	Wheat	mitochondrion	83.69	77.63
TraesCS7A01G307200.1	Wheat	plastid	83.69	77.12
Bra002976.1-P	Field mustard	mitochondrion	46.1	62.5
Os07t0549800-01	Rice	mitochondrion	58.87	62.41
GSMUA_Achr8P07380_001	Banana	mitochondrion	58.16	60.74
KRH25927	Soybean	mitochondrion, plastid	62.41	60.69
GSMUA_Achr11P...	Banana	mitochondrion	46.1	60.19
KRH55574	Soybean	mitochondrion, plastid	60.99	59.31
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	46.81	57.39
CDY43035	Canola	plastid	59.57	54.9
Bra029020.1-P	Field mustard	plastid	59.57	54.9
Solyc07g063900.2.1	Tomato	plastid	58.16	54.3
CDY42466	Canola	plastid	58.16	53.59
CDY43820	Canola	plastid	58.87	52.87
CDY64931	Canola	plastid	56.74	52.29
PGSC0003DMT400049607	Potato	plastid	58.16	52.23
AT5G54580.1	Thale cress	mitochondrion, plastid	57.45	51.92
Os01t0502800-01	Rice	mitochondrion	18.44	49.06
VIT_08s0007g00070.t01	Wine grape	mitochondrion	46.1	48.87
Os04t0414300-00	Rice	mitochondrion	32.62	33.58
Os03t0278800-00	Rice	plastid	40.43	32.95
Os01t0974701-01	Rice	mitochondrion	23.4	28.45
Os01t0916600-01	Rice	mitochondrion	29.08	27.33
Os12t0632000-01	Rice	nucleus	24.82	21.6
Os03t0836200-03	Rice	nucleus	29.08	20.0
Os04t0583800-01	Rice	plastid	14.18	16.95
Os03t0670700-01	Rice	nucleus	22.7	16.33
Os10t0321700-01	Rice	mitochondrion	36.17	16.09
Os07t0602600-01	Rice	mitochondrion	26.95	15.97
Os12t0502200-01	Rice	mitochondrion	29.08	15.89
Os03t0681900-01	Rice	nucleus	23.4	10.71
Os02t0730800-01	Rice	plastid	23.4	8.27

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EntrezGene:4344631	EMBL:AK119802	ProteinID:BAD03017.1	ProteinID:BAF22878.1
ProteinID:BAT03768.1	ProteinID:EEE68016.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0080156	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0139000	EnsemblPlants:Os08t0139000-02	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392
UniProt:Q6ZKI2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000225FAF
RefSeq:XP_015649818.1	SEG:seg	:	:	:	:

Description

Similar to nucleolin. (Os08t0139000-01);Similar to RNA-binding glycine rich protein (RGP-2). (Os08t0139000-02)

Coordinates

chr8:-:2173729..2177047

Molecular Weight (calculated)

15265.1 Da

IEP (calculated)

10.466

GRAVY (calculated)

-0.450

Length

141 amino acids

Sequence
(BLAST)

001: MAAAATARSG FRRMFSISAF SPPKPPTPPP KADPSPNLFI SGLSKRTTTD GLKEAFAKFG EVIHARVVTD RVTGFSKGFG FVRYATVEDA AKGIEGMDGK
101: FLDGWVIFAE YARPRTPPQQ PEMNSQPQQS WGPPSSSWGA Q

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.