Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36665 | Sorghum | mitochondrion | 86.79 | 43.81 |
| KRH10291 | Soybean | nucleus | 60.38 | 43.24 |
| TraesCS4D01G205200.1 | Wheat | mitochondrion | 77.36 | 39.42 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 77.36 | 39.42 |
| TraesCS4B01G204300.1 | Wheat | mitochondrion | 77.36 | 38.68 |
| KRH23034 | Soybean | mitochondrion | 62.26 | 38.37 |
| VIT_06s0004g04260.t01 | Wine grape | mitochondrion | 73.58 | 36.79 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 71.7 | 34.55 |
| CDY09244 | Canola | mitochondrion | 64.15 | 32.69 |
| AT3G46020.1 | Thale cress | mitochondrion | 60.38 | 31.37 |
| Bra020279.1-P | Field mustard | mitochondrion | 64.15 | 30.91 |
| Os04t0414300-00 | Rice | mitochondrion | 52.83 | 20.44 |
| AT5G59860.1 | Thale cress | nucleus | 60.38 | 20.38 |
| Os07t0549800-01 | Rice | mitochondrion | 47.17 | 18.8 |
| Os08t0139000-02 | Rice | mitochondrion | 49.06 | 18.44 |
| Os01t0974701-01 | Rice | mitochondrion | 35.85 | 16.38 |
| Os01t0916600-01 | Rice | mitochondrion | 45.28 | 16.0 |
| Os03t0278800-00 | Rice | plastid | 41.51 | 12.72 |
| Os12t0632000-01 | Rice | nucleus | 37.74 | 12.35 |
| Os03t0670700-01 | Rice | nucleus | 37.74 | 10.2 |
| Os07t0602600-01 | Rice | mitochondrion | 45.28 | 10.08 |
| Os03t0836200-03 | Rice | nucleus | 37.74 | 9.76 |
| Os12t0502200-01 | Rice | mitochondrion | 43.4 | 8.91 |
| Os10t0321700-01 | Rice | mitochondrion | 45.28 | 7.57 |
| Os03t0681900-01 | Rice | nucleus | 35.85 | 6.17 |
| Os02t0730800-01 | Rice | plastid | 35.85 | 4.76 |
| Os04t0583800-01 | Rice | plastid | 5.66 | 2.54 |
Protein Annotations
| EnsemblPlants:Os01t0502800-01 | EnsemblPlantsGene:Os01g0502800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45502 | PANTHER:PTHR45502:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:BAS72329.1 | SUPFAM:SSF54928 |
| UniParc:UPI0000DD8B32 | UniProt:A0A0N7KD12 | MapMan:35.2 | : | : | : |
Description
RNA recognition motif domain domain containing protein. (Os01t0502800-01)
Coordinates
chr1:-:17422915..17427640
Molecular Weight (calculated)
5838.1 Da
IEP (calculated)
10.961
GRAVY (calculated)
-0.353
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: GSVARLVRDN QTGRPKGFGF VKYSSQADAE KAVKAMDGRI IRGRLIFVEI AKE
001: MKADPRKETG IKLVAVEISL TFGNRKWQPH KNSGAKDEEA KFNKRTKYKM RIRPRSSISK RRRLIGGKTL TCVSNSGLSA YTTDQSLRQL FAPFARLIKD
101: QQTQRPKGFG FITFESEDDA QKALKALNGK IVNGRLIFVE TAKEVEAPTT SLKSNKD
101: QQTQRPKGFG FITFESEDDA QKALKALNGK IVNGRLIFVE TAKEVEAPTT SLKSNKD
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXD2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.