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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 4
  • mitochondrion 4
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:plastid
 mitochondrion: 23257241
nucleus: 23257241
mitochondrion: 12746528
plastid: 15069638
nucleus: 18022940
mitochondrion: 19010998
mitochondrion: 23027867
gfp PMID: 23257241 doi
L Xu, C Carrie, SR Law, MW Murcha, J Whelan
Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 12746528 doi
JL Heazlewood, KA Howell, J Whelan, AH Millar
Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d012052_P001 Maize mitochondrion, plastid 71.33 68.59
EES01954 Sorghum plastid 66.0 67.35
HORVU3Hr1G093400.1 Barley plastid 71.33 63.69
TraesCS3A01G422600.1 Wheat nucleus 72.67 63.01
TraesCS3B01G457900.1 Wheat plastid 73.33 62.86
TraesCS3D01G417800.1 Wheat plastid 72.0 61.36
Os01t0502800-01 Rice mitochondrion 16.0 45.28
PGSC0003DMT400001786 Potato nucleus 20.67 44.29
KRH17905 Soybean cytosol, mitochondrion, nucleus 23.33 42.17
VIT_12s0059g01210.t01 Wine grape mitochondrion 38.0 40.71
KRH50325 Soybean vacuole 38.0 40.71
GSMUA_Achr11P... Banana mitochondrion 35.33 40.15
Bra029692.1-P Field mustard mitochondrion 36.67 38.46
AT3G08000.1 Thale cress plastid 36.67 38.46
Solyc07g049270.2.1 Tomato mitochondrion 36.0 38.3
Os12t0632000-01 Rice nucleus 41.33 38.27
CDY28003 Canola plastid 36.0 37.5
CDY35978 Canola mitochondrion, plastid 35.33 37.06
Os07t0549800-01 Rice mitochondrion 31.33 35.34
Os04t0414300-00 Rice mitochondrion 29.33 32.12
Os12t0502200-01 Rice mitochondrion 54.0 31.4
Os01t0974701-01 Rice mitochondrion 23.33 30.17
Os07t0602600-01 Rice mitochondrion 47.33 29.83
Os08t0139000-02 Rice mitochondrion 27.33 29.08
Os03t0836200-03 Rice nucleus 37.33 27.32
Os03t0670700-01 Rice nucleus 34.67 26.53
Os03t0278800-00 Rice plastid 29.33 25.43
Os10t0321700-01 Rice mitochondrion 48.67 23.03
Os04t0583800-01 Rice plastid 15.33 19.49
Os03t0681900-01 Rice nucleus 32.0 15.58
Os02t0730800-01 Rice plastid 22.0 8.27
Protein Annotations
MapMan:16.12.5.2Gene3D:3.30.70.330EntrezGene:4324334EMBL:AK059446EMBL:AK121668ProteinID:BAB86134.1
ProteinID:BAB92683.1ProteinID:BAF07109.1ProteinID:BAS75890.1ProteinID:EAZ14617.1GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfEnsemblPlantsGene:Os01g0916600
EnsemblPlants:Os01t0916600-01PFAM:PF00076PFscan:PS50102PANTHER:PTHR44202UniProt:Q7F2X8InterPro:RBD_domain_sf
InterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI00000ABE5BRefSeq:XP_015622053.1RefSeq:XP_015622054.1
SEG:seg:::::
Description
GLYCINE-RICH RNA-BINDING PROTEIN 1RNA recognition motif, glycine rich protein domain containing protein. (Os01t0916600-01)
Coordinates
chr1:+:39954580..39956409
Molecular Weight (calculated)
15547.8 Da
IEP (calculated)
8.882
GRAVY (calculated)
-0.587
Length
150 amino acids
Sequence
(BLAST)
001: MAAFNKLGSF LRHSGLTSSA SAGSSPAMFN AARLMSTKLF VGGLSWNTND DSLKEAFTSF GDVTEARVIN DRESGRSRGF GFVSFANGDD AKSAMDAMDG
101: KELEGRSIRV NFANERPPGN RGGGGYGGGG GGYGNQGGYG DGNRGYGGQY
Best Arabidopsis Sequence Match ( AT3G23830.1 )
(BLAST)
001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY
Arabidopsis Description
RBG4GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.