Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28003 | Canola | plastid | 82.52 | 81.94 |
| CDY35978 | Canola | mitochondrion, plastid | 81.82 | 81.82 |
| Bra029692.1-P | Field mustard | mitochondrion | 81.12 | 81.12 |
| OQU88096 | Sorghum | cytosol, mitochondrion, nucleus | 30.07 | 66.15 |
| PGSC0003DMT400001786 | Potato | nucleus | 31.47 | 64.29 |
| KXG32985 | Sorghum | cytosol, mitochondrion, nucleus | 30.07 | 64.18 |
| KRH17905 | Soybean | cytosol, mitochondrion, nucleus | 34.97 | 60.24 |
| VIT_12s0059g01210.t01 | Wine grape | mitochondrion | 58.74 | 60.0 |
| GSMUA_Achr11P... | Banana | mitochondrion | 53.85 | 58.33 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 54.55 | 55.32 |
| TraesCS3B01G454200.1 | Wheat | mitochondrion | 53.15 | 52.05 |
| KRH50325 | Soybean | vacuole | 50.35 | 51.43 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 52.45 | 51.37 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 35.66 | 37.5 |
| Os01t0916600-01 | Rice | mitochondrion | 38.46 | 36.67 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 25.17 | 31.86 |
| HORVU3Hr1G093400.1 | Barley | plastid | 37.06 | 31.55 |
| Zm00001d012052_P001 | Maize | mitochondrion, plastid | 34.27 | 31.41 |
| AT4G13860.1 | Thale cress | cytosol | 18.88 | 31.03 |
| AT4G13850.1 | Thale cress | mitochondrion | 34.27 | 31.01 |
| TraesCS3D01G417800.1 | Wheat | plastid | 37.76 | 30.68 |
| AT3G46020.1 | Thale cress | mitochondrion | 20.98 | 29.41 |
| AT5G06210.1 | Thale cress | mitochondrion | 29.37 | 28.77 |
| AT2G27330.1 | Thale cress | mitochondrion | 19.58 | 24.14 |
| AT1G18630.1 | Thale cress | mitochondrion | 25.87 | 23.87 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 26.57 | 22.75 |
| AT4G39260.1 | Thale cress | nucleus | 25.17 | 21.3 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 23.08 | 21.15 |
| AT2G21660.1 | Thale cress | nucleus | 23.78 | 19.32 |
| AT5G59860.1 | Thale cress | nucleus | 19.58 | 17.83 |
| AT1G73530.1 | Thale cress | plastid | 21.68 | 17.13 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 31.47 | 15.57 |
| AT5G61030.1 | Thale cress | mitochondrion | 32.17 | 14.89 |
| AT3G26420.1 | Thale cress | nucleus | 24.48 | 14.29 |
| AT3G20930.2 | Thale cress | plastid | 26.57 | 10.03 |
| AT1G60650.2 | Thale cress | nucleus | 19.58 | 9.59 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 20.28 | 9.35 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:819991 | ProteinID:AAF21210.1 | ProteinID:AEE74629.1 | ArrayExpress:AT3G08000 |
| EnsemblPlantsGene:AT3G08000 | RefSeq:AT3G08000 | TAIR:AT3G08000 | RefSeq:AT3G08000-TAIR-G | EnsemblPlants:AT3G08000.1 | TAIR:AT3G08000.1 |
| Unigene:At.40270 | EMBL:BT012118 | EMBL:BT012373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_187457.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50102 | PANTHER:PTHR44202 | UniProt:Q9SFB4 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A0C35 | SEG:seg | : |
Description
At3g08000 [Source:UniProtKB/TrEMBL;Acc:Q9SFB4]
Coordinates
chr3:-:2554829..2555929
Molecular Weight (calculated)
15614.7 Da
IEP (calculated)
10.532
GRAVY (calculated)
-0.206
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKNGIELLV RRVSAIPQHS ISSSFHFLPQ FCTSSSASPS SKLFIGGLSW SVDEQSLKDA FSSFGEVAEV RIAYDKGSGR SRGFGFVDFA EEGDALSAKD
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK
101: AMDGKGLLGR PLRISFALER VRGGPVVVPR LGKSKRERER VFK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.