Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G46020.1 | Thale cress | mitochondrion | 32.18 | 27.45 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 42.53 | 27.21 |
| AT4G13850.1 | Thale cress | mitochondrion | 47.13 | 25.95 |
| AT5G06210.1 | Thale cress | mitochondrion | 40.23 | 23.97 |
| AT1G18630.1 | Thale cress | mitochondrion | 41.38 | 23.23 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 42.53 | 22.16 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 39.08 | 21.79 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 27.59 | 21.24 |
| AT2G27330.1 | Thale cress | mitochondrion | 27.59 | 20.69 |
| AT3G08000.1 | Thale cress | plastid | 31.03 | 18.88 |
| AT2G21660.1 | Thale cress | nucleus | 37.93 | 18.75 |
| AT4G39260.1 | Thale cress | nucleus | 35.63 | 18.34 |
| AT5G59860.1 | Thale cress | nucleus | 29.89 | 16.56 |
| AT1G73530.1 | Thale cress | plastid | 32.18 | 15.47 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 45.98 | 13.84 |
| AT3G26420.1 | Thale cress | nucleus | 34.48 | 12.24 |
| AT5G61030.1 | Thale cress | mitochondrion | 41.38 | 11.65 |
| AT1G60650.2 | Thale cress | nucleus | 29.89 | 8.9 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 31.03 | 8.71 |
| AT3G20930.2 | Thale cress | plastid | 28.74 | 6.6 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:827020 | ProteinID:AEE83337.1 | ProteinID:ANM68072.1 | ArrayExpress:AT4G13860 |
| EnsemblPlantsGene:AT4G13860 | RefSeq:AT4G13860 | TAIR:AT4G13860 | RefSeq:AT4G13860-TAIR-G | EnsemblPlants:AT4G13860.1 | TAIR:AT4G13860.1 |
| EMBL:BT014844 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001329851.1 | RefSeq:NP_193122.2 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PO:PO:0000293 | PFscan:PS50102 | PANTHER:PTHR44202 | UniProt:Q6ID29 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000162A2D | : | : |
Description
At4g13860 [Source:UniProtKB/TrEMBL;Acc:Q6ID29]
Coordinates
chr4:+:8022497..8023603
Molecular Weight (calculated)
9533.1 Da
IEP (calculated)
4.558
GRAVY (calculated)
-0.366
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MATRVYVGNL SPTTTDDMLR EAFSGYGNVV DAIVMRDRYT DRSRGFGFVT YSSHSEAEAA VSGMDGKELN GRRVSVKLFG IGDIDDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.