Factsheet for AT5G04280.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80910	Canola	nucleus	76.13	90.42
CDY11283	Canola	nucleus	88.39	89.54
Bra005798.1-P	Field mustard	nucleus	88.39	89.54
VIT_13s0019g05080.t01	Wine grape	nucleus	57.1	63.67
KRG90774	Soybean	nucleus	55.81	62.01
PGSC0003DMT400043581	Potato	nucleus	52.58	60.15
GSMUA_Achr2P12550_001	Banana	nucleus	38.06	52.68
Solyc03g071560.2.1	Tomato	nucleus	52.26	51.59
KRH35987	Soybean	nucleus	48.06	51.56
AT1G60650.2	Thale cress	nucleus	47.74	50.68
GSMUA_Achr4P22370_001	Banana	nucleus	50.65	50.48
PGSC0003DMT400079815	Potato	nucleus	49.68	48.43
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	46.13	48.15
TraesCS4B01G026400.1	Wheat	nucleus	49.03	47.65
TraesCS4D01G023800.2	Wheat	nucleus	48.71	47.48
TraesCS4A01G288500.1	Wheat	nucleus	48.39	47.32
KXG37841	Sorghum	nucleus	48.06	47.15
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	47.1	46.95
TraesCS2D01G238900.1	Wheat	nucleus	44.19	46.76
OQU88590	Sorghum	nucleus	45.16	46.51
TraesCS2B01G259400.1	Wheat	nucleus	43.87	46.42
TraesCS2A01G237400.1	Wheat	nucleus	43.87	46.42
Os03t0681900-01	Rice	nucleus	45.81	46.1
Solyc11g008210.1.1	Tomato	nucleus	43.87	46.1
Zm00001d019041_P001	Maize	extracellular, plasma membrane	43.23	45.73
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	45.48	40.87
AT4G39260.1	Thale cress	nucleus	22.26	40.83
AT2G21660.1	Thale cress	nucleus	21.61	38.07
Zm00001d007799_P001	Maize	mitochondrion, plastid	43.23	34.9
AT3G26420.1	Thale cress	nucleus	26.45	33.47
AT1G18630.1	Thale cress	mitochondrion	16.45	32.9
AT4G13850.1	Thale cress	mitochondrion	16.45	32.28
AT4G13860.1	Thale cress	cytosol	8.71	31.03
AT3G23830.1	Thale cress	mitochondrion, plastid	13.23	30.15
AT3G46020.1	Thale cress	mitochondrion	9.03	27.45
AT5G06210.1	Thale cress	mitochondrion	10.32	21.92
AT3G08000.1	Thale cress	plastid	9.35	20.28
AT1G74230.1	Thale cress	mitochondrion, plastid	18.71	20.07
AT2G37510.2	Thale cress	mitochondrion, plastid	10.65	19.76
AT5G61030.1	Thale cress	mitochondrion	19.03	19.09
AT5G54580.1	Thale cress	mitochondrion, plastid	9.35	18.59
AT5G59865.1	Thale cress	mitochondrion, plastid	6.77	18.58
AT2G27330.1	Thale cress	mitochondrion	6.45	17.24
AT5G59860.1	Thale cress	nucleus	7.1	14.01
AT1G73530.1	Thale cress	plastid	7.42	12.71
AT3G20930.2	Thale cress	plastid	8.06	6.6

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:830307	ProteinID:AED90723.1	EMBL:AL391716
ArrayExpress:AT5G04280	EnsemblPlantsGene:AT5G04280	RefSeq:AT5G04280	TAIR:AT5G04280	RefSeq:AT5G04280-TAIR-G	EnsemblPlants:AT5G04280.1
TAIR:AT5G04280.1	EMBL:AY092975	EMBL:AY114645	Unigene:At.33149	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009409	GO:GO:0009414
GO:GO:0009628	GO:GO:0009987	GO:GO:0031490	GO:GO:0045892	GO:GO:0046872	GO:GO:0048026
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	RefSeq:NP_196048.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	UniProt:Q8RWN5	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00000A9E52	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]

Coordinates

chr5:+:1192259..1195759

Molecular Weight (calculated)

33488.1 Da

IEP (calculated)

9.170

GRAVY (calculated)

-1.003

Length

310 amino acids

Sequence
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.