Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59763 | Canola | nucleus | 88.64 | 93.41 |
| Bra031210.1-P | Field mustard | nucleus | 88.64 | 92.86 |
| CDY70933 | Canola | nucleus | 88.64 | 92.86 |
| CDY15876 | Canola | nucleus | 85.23 | 88.76 |
| Bra030284.1-P | Field mustard | nucleus | 84.66 | 88.69 |
| CDY72366 | Canola | nucleus | 83.52 | 85.96 |
| AT4G39260.1 | Thale cress | nucleus | 76.7 | 79.88 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.84 | 78.81 |
| PGSC0003DMT400001879 | Potato | cytosol | 75.0 | 75.0 |
| Solyc01g109660.2.1 | Tomato | extracellular | 73.86 | 74.29 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 55.68 | 73.68 |
| KRH29451 | Soybean | nucleus | 70.45 | 72.51 |
| Solyc10g051380.1.1 | Tomato | nucleus | 53.41 | 72.31 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 66.48 | 72.22 |
| KRH29453 | Soybean | nucleus | 56.82 | 71.43 |
| KRH29452 | Soybean | nucleus | 63.07 | 71.15 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 62.5 | 70.97 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 65.34 | 70.55 |
| TraesCS4A01G293000.1 | Wheat | plastid | 64.77 | 70.37 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 63.07 | 69.81 |
| Zm00001d041246_P001 | Maize | nucleus | 57.39 | 69.66 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 62.5 | 69.62 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 67.05 | 69.41 |
| KRH51528 | Soybean | nucleus | 71.59 | 69.23 |
| Os12t0632000-01 | Rice | nucleus | 63.64 | 69.14 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 64.77 | 68.67 |
| KRH60842 | Soybean | mitochondrion | 71.59 | 68.11 |
| PGSC0003DMT400084258 | Potato | nucleus | 64.2 | 68.07 |
| PGSC0003DMT400084290 | Potato | nucleus | 64.2 | 68.07 |
| PGSC0003DMT400083014 | Potato | nucleus | 64.2 | 68.07 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 62.5 | 67.9 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 62.5 | 67.9 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 62.5 | 67.9 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 59.66 | 67.74 |
| PGSC0003DMT400084266 | Potato | extracellular | 61.93 | 67.7 |
| Zm00001d031168_P001 | Maize | plastid | 59.09 | 67.1 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 63.64 | 67.07 |
| KRH29454 | Soybean | nucleus | 64.77 | 67.06 |
| KXG37870 | Sorghum | nucleus | 64.77 | 67.06 |
| EES16438 | Sorghum | nucleus | 62.5 | 66.67 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 62.5 | 64.71 |
| TraesCS5D01G020900.1 | Wheat | plastid | 63.07 | 63.79 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 52.84 | 53.76 |
| Os03t0670700-01 | Rice | nucleus | 57.95 | 52.04 |
| AT4G13850.1 | Thale cress | mitochondrion | 43.18 | 48.1 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.14 | 46.46 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 31.25 | 40.44 |
| AT1G18630.1 | Thale cress | mitochondrion | 34.09 | 38.71 |
| AT4G13860.1 | Thale cress | cytosol | 18.75 | 37.93 |
| AT3G26420.1 | Thale cress | nucleus | 42.61 | 30.61 |
| AT3G46020.1 | Thale cress | mitochondrion | 16.48 | 28.43 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 46.02 | 28.03 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 17.61 | 27.43 |
| AT5G61030.1 | Thale cress | mitochondrion | 46.59 | 26.54 |
| AT3G08000.1 | Thale cress | plastid | 19.32 | 23.78 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 21.02 | 23.72 |
| AT5G06210.1 | Thale cress | mitochondrion | 19.32 | 23.29 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 21.02 | 22.16 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 38.07 | 21.61 |
| AT2G27330.1 | Thale cress | mitochondrion | 14.2 | 21.55 |
| AT1G60650.2 | Thale cress | nucleus | 32.95 | 19.86 |
| AT1G73530.1 | Thale cress | plastid | 17.05 | 16.57 |
| AT5G59860.1 | Thale cress | nucleus | 14.77 | 16.56 |
| AT3G20930.2 | Thale cress | plastid | 17.05 | 7.92 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | EntrezGene:816705 | ProteinID:AAD23639.1 | ProteinID:AEC07209.1 | EMBL:AF428381 |
| EMBL:AK318968 | ArrayExpress:AT2G21660 | EnsemblPlantsGene:AT2G21660 | RefSeq:AT2G21660 | TAIR:AT2G21660 | RefSeq:AT2G21660-TAIR-G |
| EnsemblPlants:AT2G21660.1 | TAIR:AT2G21660.1 | Symbol:ATGRP7 | EMBL:AY042826 | EMBL:AY054284 | EMBL:AY072523 |
| EMBL:AY085214 | GO:GO:0000003 | GO:GO:0000380 | GO:GO:0002376 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003690 | GO:GO:0003697 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006406 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0006970 | GO:GO:0007275 | GO:GO:0007623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009409 | GO:GO:0009414 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009735 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010043 | GO:GO:0010119 | GO:GO:0010228 | GO:GO:0010501 |
| GO:GO:0016043 | GO:GO:0032508 | GO:GO:0045087 | GO:GO:0046686 | GO:GO:0048046 | InterPro:IPR000504 |
| InterPro:IPR012677 | EMBL:L00648 | EMBL:L04172 | RefSeq:NP_179760.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000282 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | UniProt:Q03250 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0000000D3F | EMBL:Z14987 | SEG:seg | : | : |
Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
Coordinates
chr2:-:9265084..9266557
Molecular Weight (calculated)
16891.0 Da
IEP (calculated)
5.942
GRAVY (calculated)
-0.759
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.