Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22313117
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g051390.1.1 | Tomato | nucleus | 70.81 | 96.61 |
| PGSC0003DMT400083014 | Potato | nucleus | 73.29 | 71.08 |
| PGSC0003DMT400084258 | Potato | nucleus | 73.29 | 71.08 |
| PGSC0003DMT400084290 | Potato | nucleus | 73.29 | 71.08 |
| CDY41969 | Canola | cytosol | 54.66 | 68.75 |
| CDY42616 | Canola | cytosol | 66.46 | 68.15 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 70.19 | 67.66 |
| Bra011869.1-P | Field mustard | cytosol | 67.7 | 67.28 |
| Bra010693.1-P | Field mustard | nucleus | 68.32 | 66.67 |
| CDX90323 | Canola | plastid | 68.32 | 66.67 |
| KRH29453 | Soybean | nucleus | 57.76 | 66.43 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 67.08 | 66.26 |
| Zm00001d041246_P001 | Maize | nucleus | 59.63 | 66.21 |
| TraesCS4A01G293000.1 | Wheat | plastid | 66.46 | 66.05 |
| PGSC0003DMT400001879 | Potato | cytosol | 72.05 | 65.91 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 69.57 | 65.88 |
| Bra030284.1-P | Field mustard | nucleus | 68.32 | 65.48 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 65.84 | 65.43 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 54.04 | 65.41 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 68.94 | 65.29 |
| CDY59763 | Canola | nucleus | 67.7 | 65.27 |
| CDY15876 | Canola | nucleus | 68.32 | 65.09 |
| TraesCS5D01G020900.1 | Wheat | plastid | 70.19 | 64.94 |
| CDY70933 | Canola | nucleus | 67.7 | 64.88 |
| Bra031210.1-P | Field mustard | nucleus | 67.7 | 64.88 |
| EES16438 | Sorghum | nucleus | 66.46 | 64.85 |
| Bra001972.1-P | Field mustard | nucleus | 65.84 | 64.63 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 66.46 | 64.46 |
| CDY72366 | Canola | nucleus | 68.32 | 64.33 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 62.73 | 63.92 |
| Zm00001d031168_P001 | Maize | plastid | 61.49 | 63.87 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 62.73 | 63.52 |
| AT4G39260.1 | Thale cress | nucleus | 66.46 | 63.31 |
| KRH29451 | Soybean | nucleus | 67.08 | 63.16 |
| CDY46213 | Canola | nucleus | 47.83 | 63.11 |
| Os12t0632000-01 | Rice | nucleus | 63.35 | 62.96 |
| KXG37870 | Sorghum | nucleus | 66.46 | 62.94 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 60.25 | 62.58 |
| KRH29452 | Soybean | nucleus | 60.25 | 62.18 |
| AT2G21660.1 | Thale cress | nucleus | 67.7 | 61.93 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 58.39 | 60.65 |
| KRH29454 | Soybean | nucleus | 63.98 | 60.59 |
| CDX71276 | Canola | nucleus | 64.6 | 60.47 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 60.25 | 59.88 |
| CDY12133 | Canola | cytosol | 58.39 | 59.49 |
| KRH51528 | Soybean | nucleus | 67.08 | 59.34 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 59.63 | 59.26 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 59.01 | 58.64 |
| KRH60842 | Soybean | mitochondrion | 65.84 | 57.3 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 54.04 | 50.29 |
| Os03t0670700-01 | Rice | nucleus | 60.25 | 49.49 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.09 | 42.42 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 35.4 | 39.31 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 34.78 | 36.84 |
| PGSC0003DMT400045627 | Potato | nucleus | 44.72 | 33.64 |
| PGSC0003DMT400001786 | Potato | nucleus | 14.29 | 32.86 |
| PGSC0003DMT400076497 | Potato | nucleus | 40.99 | 32.2 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 49.69 | 30.42 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 23.6 | 29.46 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 40.37 | 25.9 |
| PGSC0003DMT400043581 | Potato | nucleus | 43.48 | 25.83 |
| PGSC0003DMT400028726 | Potato | nucleus | 22.36 | 24.66 |
| PGSC0003DMT400003685 | Potato | nucleus | 45.96 | 24.42 |
| PGSC0003DMT400049607 | Potato | plastid | 21.74 | 22.29 |
| PGSC0003DMT400079815 | Potato | nucleus | 42.24 | 21.38 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 18.63 | 20.27 |
| PGSC0003DMT400022733 | Potato | plastid | 20.5 | 20.25 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 18.63 | 20.13 |
| PGSC0003DMT400050134 | Potato | plastid | 19.25 | 7.75 |
Protein Annotations
| EntrezGene:102587499 | MapMan:16.7.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1D7N7 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400033903 | PGSC:PGSC0003DMG400033903 | EnsemblPlants:PGSC0003DMT400084266 | PFscan:PS50102 | PANTHER:PTHR44202 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295F61A | RefSeq:XP_006349599.1 | SEG:seg |
Description
SGRP-1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033903]
Coordinates
chr10:+:44144168..44145232
Molecular Weight (calculated)
15560.7 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.681
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEVEYSCF VGGLAWATTD RTLSDAFSTY GEVVDSKIIN DRETGRSRGF GFVTFKDEKS MKEAISGMNG SELDGRNITV NEAQARGSGG GGGGGGFGGG
101: RRREGGGGGY GGGGGYGGGG GGGYGGGRRE GGGGGGYGGG RREGGGGGGY GGGGYGGGAR Y
101: RRREGGGGGY GGGGGYGGGG GGGYGGGRRE GGGGGGYGGG RREGGGGGGY GGGGYGGGAR Y
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.