Factsheet for PGSC0003DMT400053017

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	71.71	93.97
PGSC0003DMT400040748	Potato	mitochondrion	73.03	76.55
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	63.82	63.82
GSMUA_Achr7P02750_001	Banana	mitochondrion	58.55	59.33
KRG97345	Soybean	mitochondrion	54.61	58.87
AT3G23830.1	Thale cress	mitochondrion, plastid	52.63	58.82
CDY06468	Canola	mitochondrion	57.24	58.78
AT4G13850.1	Thale cress	mitochondrion	60.53	58.23
Bra037056.1-P	Field mustard	mitochondrion	57.24	58.0
CDY08312	Canola	mitochondrion	57.24	56.86
Bra013997.1-P	Field mustard	mitochondrion	53.95	56.55
CDY47311	Canola	mitochondrion	53.29	56.25
CDY47314	Canola	mitochondrion	55.26	56.0
CDY53035	Canola	mitochondrion	55.26	55.63
KRH31570	Soybean	mitochondrion	48.68	51.03
GSMUA_Achr4P16080_001	Banana	mitochondrion	62.5	50.0
Bra014000.1-P	Field mustard	mitochondrion	57.89	39.64
PGSC0003DMT400001786	Potato	nucleus	16.45	35.71
PGSC0003DMT400072597	Potato	mitochondrion	30.26	35.66
PGSC0003DMT400084290	Potato	nucleus	38.16	34.94
PGSC0003DMT400084258	Potato	nucleus	38.16	34.94
PGSC0003DMT400083014	Potato	nucleus	38.16	34.94
PGSC0003DMT400084266	Potato	extracellular	36.84	34.78
PGSC0003DMT400001879	Potato	cytosol	38.16	32.95
PGSC0003DMT400064758	Potato	mitochondrion	51.97	31.47
PGSC0003DMT400028726	Potato	nucleus	27.63	28.77
PGSC0003DMT400049607	Potato	plastid	29.61	28.66
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	48.68	28.14
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	24.34	24.83
PGSC0003DMT400056141	Potato	mitochondrion	23.68	24.32
PGSC0003DMT400045627	Potato	nucleus	32.89	23.36
PGSC0003DMT400076497	Potato	nucleus	30.92	22.93
PGSC0003DMT400022733	Potato	plastid	23.03	21.47
PGSC0003DMT400003685	Potato	nucleus	42.76	21.45
PGSC0003DMT400043581	Potato	nucleus	28.29	15.87
PGSC0003DMT400079815	Potato	nucleus	24.34	11.64
PGSC0003DMT400050134	Potato	plastid	25.0	9.5

Protein Annotations

EntrezGene:102587662	MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BUA3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400020576	PGSC:PGSC0003DMG400020576	EnsemblPlants:PGSC0003DMT400053017	PFscan:PS50102	PANTHER:PTHR44202	PANTHER:PTHR44202:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002956606	RefSeq:XP_015170559.1
SEG:seg	:	:	:	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020576]

Coordinates

chr9:+:59574607..59578123

Molecular Weight (calculated)

15737.3 Da

IEP (calculated)

8.450

GRAVY (calculated)

-0.388

Length

152 amino acids

Sequence
(BLAST)

001: MAFYNKLGGL LRQSISTSGN AVNAQSSAPS MLNAIRCMST KLFIGGLSFG TDDQSLKEAF NSFGDVVEAK VIMDRDSGKS KGFGFVNFTD GESAQEAMSA
101: MDGQDLNGRN IRVSLAQERA PRSGGFRSGG GGYGGGGGFG GGYGGSRQND AY

Best Arabidopsis Sequence Match ( AT4G13850.2 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSYG GGGGGYGGGG GGYGGGGDGG GGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.