Factsheet for GSMUA_Achr4P16080_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P02750_001	Banana	mitochondrion	65.26	82.67
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	42.63	69.83
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	54.21	67.76
CDY47311	Canola	mitochondrion	48.95	64.58
Bra013997.1-P	Field mustard	mitochondrion	48.95	64.14
CDY47314	Canola	mitochondrion	50.0	63.33
CDY53035	Canola	mitochondrion	50.0	62.91
PGSC0003DMT400053017	Potato	mitochondrion, plastid	50.0	62.5
KRG97345	Soybean	mitochondrion	46.32	62.41
CDY06468	Canola	mitochondrion	48.42	62.16
Bra037056.1-P	Field mustard	mitochondrion	48.42	61.33
AT3G23830.1	Thale cress	mitochondrion, plastid	43.68	61.03
CDY08312	Canola	mitochondrion	48.42	60.13
AT4G13850.1	Thale cress	mitochondrion	50.0	60.13
PGSC0003DMT400040748	Potato	mitochondrion	45.26	59.31
Solyc05g053780.2.1	Tomato	mitochondrion	47.37	55.9
KRH31570	Soybean	mitochondrion	37.37	48.97
Bra014000.1-P	Field mustard	mitochondrion	50.53	43.24
GSMUA_Achr11P...	Banana	mitochondrion	28.42	40.91
GSMUA_Achr7P27650_001	Banana	nucleus	27.37	39.1
GSMUA_Achr2P19090_001	Banana	mitochondrion	21.05	37.74
GSMUA_Achr4P14550_001	Banana	nucleus	31.05	37.34
GSMUA_Achr9P07090_001	Banana	mitochondrion	45.79	36.55
GSMUA_Achr6P34250_001	Banana	mitochondrion	21.05	36.36
GSMUA_Achr8P05200_001	Banana	cytosol	28.95	35.48
GSMUA_Achr3P30570_001	Banana	plasma membrane	31.58	35.29
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	21.05	34.78
GSMUA_Achr11P...	Banana	mitochondrion	19.47	34.26
GSMUA_Achr6P35640_001	Banana	nucleus	24.74	33.81
GSMUA_Achr4P03230_001	Banana	mitochondrion	40.53	30.08
GSMUA_Achr8P07380_001	Banana	mitochondrion	21.05	29.63
GSMUA_Achr6P15340_001	Banana	plastid	24.74	26.7
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	21.05	23.81
GSMUA_Achr5P15860_001	Banana	plastid	20.0	22.35
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	23.68	21.95
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	21.58	21.47
GSMUA_Achr2P12550_001	Banana	nucleus	23.16	19.64
GSMUA_Achr4P22370_001	Banana	nucleus	27.89	17.04
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	27.37	15.07
GSMUA_Achr2P01230_001	Banana	nucleus	21.05	12.82

Protein Annotations

EnsemblPlants:GSMUA_Achr4P16080_001	EnsemblPlants:GSMUA_Achr4T16080_001	EnsemblPlantsGene:GSMUA_Achr4G16080_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00029534AE	UniProt:M0SPC2	MapMan:16.12.5.2	:	:

Description

Glycine-rich RNA-binding protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G16080_001]

Coordinates

chr4:-:14261404..14265045

Molecular Weight (calculated)

19901.2 Da

IEP (calculated)

10.545

GRAVY (calculated)

-0.588

Length

190 amino acids

Sequence
(BLAST)

001: MKQLRTRTPP RLPQPSSRLP AISRDTTYKP TNREKMAFCS KLGGLIRQGL VRNGVAGGPN EAMHLLNSAR YMSSTKLFVG GLSFGTDDQS LKEAFNSFGN
101: VVEARVITDR DTGRSRGFGF VNFDSDASAS EALSGMDGQE LNGRNIRVSY ANDRPSGGPR GGFGGGFGGS GGFGGSGGYG GGGSAGRNDY

Best Arabidopsis Sequence Match ( AT4G13850.3 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGDG GGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.