Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 4
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 93.97 | 71.71 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 76.72 | 55.28 |
| VIT_05s0029g00440.t01 | Wine grape | mitochondrion, nucleus, plastid | 68.1 | 51.97 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 59.48 | 50.74 |
| CDY06468 | Canola | mitochondrion | 64.66 | 50.68 |
| Bra037056.1-P | Field mustard | mitochondrion | 63.79 | 49.33 |
| KRG97345 | Soybean | mitochondrion | 59.48 | 48.94 |
| CDY47311 | Canola | mitochondrion | 60.34 | 48.61 |
| CDY08312 | Canola | mitochondrion | 63.79 | 48.37 |
| Bra013997.1-P | Field mustard | mitochondrion | 60.34 | 48.28 |
| CDY47314 | Canola | mitochondrion | 62.07 | 48.0 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 62.07 | 48.0 |
| CDY53035 | Canola | mitochondrion | 62.07 | 47.68 |
| AT4G13850.1 | Thale cress | mitochondrion | 60.34 | 44.3 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 69.83 | 42.63 |
| KRH31570 | Soybean | mitochondrion | 50.86 | 40.69 |
| Solyc10g051390.1.1 | Tomato | nucleus | 41.38 | 40.68 |
| Solyc10g051380.1.1 | Tomato | nucleus | 41.38 | 36.92 |
| Solyc01g109660.2.1 | Tomato | extracellular | 49.14 | 32.57 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 36.21 | 32.56 |
| Bra014000.1-P | Field mustard | mitochondrion | 62.07 | 32.43 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 37.93 | 31.88 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 37.07 | 30.5 |
| Solyc02g066930.2.1 | Tomato | nucleus | 56.03 | 30.09 |
| Solyc07g063900.2.1 | Tomato | plastid | 37.07 | 28.48 |
| Solyc09g011210.2.1 | Tomato | plastid | 29.31 | 25.76 |
| Solyc10g081180.1.1 | Tomato | nucleus | 47.41 | 25.0 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 30.17 | 24.31 |
| Solyc01g104840.2.1 | Tomato | nucleus | 38.79 | 20.18 |
| Solyc10g047130.1.1 | Tomato | nucleus | 39.66 | 19.25 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 51.72 | 16.09 |
| Solyc03g071560.2.1 | Tomato | nucleus | 34.48 | 12.74 |
| Solyc11g007160.1.1 | Tomato | plastid | 31.9 | 9.25 |
| Solyc11g008210.1.1 | Tomato | nucleus | 21.55 | 8.47 |
Protein Annotations
| EnsemblPlants:Solyc09g092320.2.1 | EnsemblPlantsGene:Solyc09g092320.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44202 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000276BB82 | UniProt:K4CWQ8 | MapMan:16.12.5.2 | : | : | : |
Description
No Description!
Coordinates
chr9:+:71451316..71452799
Molecular Weight (calculated)
12220.3 Da
IEP (calculated)
8.491
GRAVY (calculated)
-0.366
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNAIRCMST KLFVGGLSFG TDDQSLREAF TSFGVVVEAK VIMDRDSGKS KGFGFVNFTE GQSAQDAMSA MDGQDLNGRN IRVSLAQERA PRSGGFRSGG
101: GGFGGGYGGS RQNDAY
101: GGFGGGYGGS RQNDAY
001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY
Arabidopsis Description
RBG4GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.