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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 4
  • mitochondrion 6
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 21132161
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97345 Soybean mitochondrion 74.48 76.6
VIT_05s0029g00440.t01 Wine grape mitochondrion, nucleus, plastid 55.86 53.29
PGSC0003DMT400040748 Potato mitochondrion 51.03 51.03
Solyc09g092320.2.1 Tomato mitochondrion, nucleus 40.69 50.86
PGSC0003DMT400053017 Potato mitochondrion, plastid 51.03 48.68
Solyc05g053780.2.1 Tomato mitochondrion 51.72 46.58
CDY47311 Canola mitochondrion 46.21 46.53
AT3G23830.1 Thale cress mitochondrion, plastid 43.45 46.32
Bra013997.1-P Field mustard mitochondrion 46.21 46.21
CDY47314 Canola mitochondrion 46.9 45.33
CDY06468 Canola mitochondrion 46.21 45.27
CDY53035 Canola mitochondrion 46.9 45.03
GSMUA_Achr7P02750_001 Banana mitochondrion 46.21 44.67
AT4G13850.1 Thale cress mitochondrion 48.28 44.3
Bra037056.1-P Field mustard mitochondrion 45.52 44.0
CDY08312 Canola mitochondrion 45.52 43.14
GSMUA_Achr4P16080_001 Banana mitochondrion 48.97 37.37
KRH50325 Soybean vacuole 30.34 31.43
KRH23034 Soybean mitochondrion 18.62 31.4
KRH17905 Soybean cytosol, mitochondrion, nucleus 17.93 31.33
Bra014000.1-P Field mustard mitochondrion 46.9 30.63
KRH10291 Soybean nucleus 15.17 29.73
KRH67547 Soybean mitochondrion 28.28 29.5
KRG95817 Soybean mitochondrion 27.59 28.78
KRH67959 Soybean mitochondrion 25.52 28.46
KRH77758 Soybean mitochondrion 20.69 26.55
KRH29453 Soybean nucleus 25.52 26.43
KRH27720 Soybean endoplasmic reticulum, mitochondrion 17.24 25.77
KRH25927 Soybean mitochondrion, plastid 25.52 25.52
KRH55574 Soybean mitochondrion, plastid 25.52 25.52
KRH29452 Soybean nucleus 26.9 25.0
KRH01278 Soybean mitochondrion, nucleus, plastid 40.69 24.18
KRH03133 Soybean nucleus 45.52 24.0
KRH56813 Soybean mitochondrion 44.83 23.72
KRH45033 Soybean nucleus, plastid 40.0 23.67
KRH29454 Soybean nucleus 27.59 23.53
KRH29451 Soybean nucleus 27.59 23.39
KRH51528 Soybean nucleus 26.9 21.43
KRH42209 Soybean endoplasmic reticulum 24.83 20.45
KRH60842 Soybean mitochondrion 25.52 20.0
KRH24829 Soybean mitochondrion 20.0 19.86
KRH24832 Soybean endoplasmic reticulum 19.31 19.86
KRH58335 Soybean nucleus 25.52 17.79
KRH09475 Soybean plastid 21.38 17.22
KRH40931 Soybean mitochondrion 19.31 12.12
KRH38934 Soybean plastid 12.41 11.69
KRG90774 Soybean nucleus 20.0 10.39
KRG92035 Soybean plastid 23.45 8.72
KRH54698 Soybean plastid 39.31 8.46
KRH35987 Soybean nucleus 13.1 6.57
Protein Annotations
EntrezGene:100527220MapMan:16.12.5.2Gene3D:3.30.70.330EMBL:ACUP02007146EnsemblPlantsGene:GLYMA_11G255000GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0016020GO:GO:0016021
UniProt:I1LN27InterPro:IPR000504InterPro:IPR012677EnsemblPlants:KRH31570ProteinID:KRH31570ProteinID:KRH31570.1
InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102PANTHER:PTHR44202InterPro:RBD_domain_sfInterPro:RRM_dom
SMART:SM00360SUPFAM:SSF54928TMHMM:TMhelixUniParc:UPI00023CC42DSEG:seg:
Description
hypothetical protein
Coordinates
chr11:-:34525509..34528331
Molecular Weight (calculated)
15077.0 Da
IEP (calculated)
4.729
GRAVY (calculated)
0.187
Length
145 amino acids
Sequence
(BLAST)
001: MAFCNKVGNV LRQGAARSTQ APVSSMLNYI RCMSSSKLFI GGLSYGVDDQ SLKDAFSGFG DVVDAKVITD RDSGRSRGFG FVNFSNDESA SSALSAMDGK
101: MGEALGYPMQ MIDLLDLNLA AAAVVVIAVG VLAAGGDFAS RNGGW
Best Arabidopsis Sequence Match ( AT4G13850.1 )
(BLAST)
001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGGG YGGGGGGYGG GGDGGGGF
Arabidopsis Description
RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.