CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037056.1-P	Field mustard	mitochondrion	98.65	97.33
CDY08312	Canola	mitochondrion	98.65	95.42
CDY47314	Canola	mitochondrion	89.86	88.67
CDY53035	Canola	mitochondrion	89.19	87.42
CDY47311	Canola	mitochondrion	84.46	86.81
AT4G13850.1	Thale cress	mitochondrion	81.76	76.58
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	50.68	64.66
PGSC0003DMT400040748	Potato	mitochondrion	60.14	61.38
KRG97345	Soybean	mitochondrion	56.76	59.57
Solyc05g053780.2.1	Tomato	mitochondrion	64.19	59.01
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	60.14	58.55
PGSC0003DMT400053017	Potato	mitochondrion, plastid	58.78	57.24
GSMUA_Achr7P02750_001	Banana	mitochondrion	56.76	56.0
GSMUA_Achr4P16080_001	Banana	mitochondrion	62.16	48.42
KRH31570	Soybean	mitochondrion	45.27	46.21
CDY41969	Canola	cytosol	38.51	44.53
CDY46213	Canola	nucleus	36.49	44.26
CDX82164	Canola	mitochondrion	41.89	42.76
CDY42616	Canola	cytosol	44.59	42.04
CDY15876	Canola	nucleus	47.97	42.01
CDY72366	Canola	nucleus	47.3	40.94
CDX90323	Canola	plastid	45.27	40.61
CDY70933	Canola	nucleus	45.95	40.48
CDY19230	Canola	mitochondrion	37.84	40.29
CDY59763	Canola	nucleus	45.27	40.12
CDY51614	Canola	mitochondrion	39.19	40.0
CDY26743	Canola	mitochondrion	39.19	39.19
CDY12133	Canola	cytosol	41.22	38.61
CDX71276	Canola	nucleus	43.92	37.79
CDY09244	Canola	mitochondrion	26.35	37.5
CDY28003	Canola	plastid	33.78	34.72
CDX74955	Canola	plastid	33.78	34.48
CDX91368	Canola	plastid	33.78	34.48
CDY31588	Canola	nucleus	16.89	32.05
CDY42426	Canola	mitochondrion	51.35	31.41
CDY14089	Canola	mitochondrion	30.41	30.82
CDY04982	Canola	mitochondrion	30.41	30.82
CDY35978	Canola	mitochondrion, plastid	29.73	30.77
CDY49123	Canola	mitochondrion	54.73	30.45
CDX82066	Canola	cytosol, nucleus, plastid	19.59	30.21
CDX73070	Canola	mitochondrion	54.73	30.0
CDX96526	Canola	mitochondrion	56.08	29.86
CDY64931	Canola	plastid	30.41	29.41
CDY42466	Canola	plastid	30.41	29.41
CDY43035	Canola	plastid	29.73	28.76
CDY43820	Canola	plastid	29.73	28.03
CDY65478	Canola	endoplasmic reticulum	39.19	27.88
CDY16825	Canola	plastid	49.32	27.76
CDX71070	Canola	mitochondrion	23.65	23.03
CDX87197	Canola	plastid	50.0	22.49
CDY02175	Canola	mitochondrion	51.35	22.42
CDX83260	Canola	mitochondrion	20.27	22.39
CDX83617	Canola	nucleus	34.46	21.98
CDY31170	Canola	mitochondrion, nucleus	19.59	21.97
CDY13632	Canola	nucleus	35.14	21.76
CDY52166	Canola	nucleus	35.14	21.4
CDY48990	Canola	nucleus	35.14	21.4
CDY11283	Canola	nucleus	32.43	15.69
CDX80910	Canola	nucleus	23.65	13.41
CDY34132	Canola	nucleus	21.62	12.55
CDY19589	Canola	plastid	30.41	12.06
CDY06395	Canola	nucleus	29.73	11.06

Protein Annotations

EnsemblPlants:CDY06468	EnsemblPlantsGene:GSBRNA2T00122542001	Gene3D:3.30.70.330	GO:A0A078F433	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY06468	ProteinID:CDY06468.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE45CC	MapMan:16.7.2	MapMan:16.12.5.2	:

Description

BnaC06g11760D

Coordinates

chrLK031970:+:472693..473851

Molecular Weight (calculated)

15168.7 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.295

Length

148 amino acids

Sequence
(BLAST)

001: MAFCKSLGGL LRQGVVSQTG NVPVTSMLGS LRYMSTKLFV GGLSWGTDDQ SLREAFANFG EVVDAKVIVD RETGRSRGFG FVNFTDETAA NTAISEMDGK
101: DLNGRSIRVN VANERPSTPR YGGGGGYGGG GGYGGGSYGA GGGDGGGY

Best Arabidopsis Sequence Match ( AT4G13850.1 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGGG YGGGGGGYGG GGDGGGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.