Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
21417358
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010693.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY41969 | Canola | cytosol | 71.52 | 92.19 |
| CDY42616 | Canola | cytosol | 85.45 | 89.81 |
| CDY12133 | Canola | cytosol | 84.85 | 88.61 |
| AT4G39260.1 | Thale cress | nucleus | 85.45 | 83.43 |
| Solyc10g051390.1.1 | Tomato | nucleus | 55.76 | 77.97 |
| CDY15876 | Canola | nucleus | 78.79 | 76.92 |
| CDY70933 | Canola | nucleus | 77.58 | 76.19 |
| CDY59763 | Canola | nucleus | 76.36 | 75.45 |
| CDY72366 | Canola | nucleus | 78.18 | 75.44 |
| Solyc10g051380.1.1 | Tomato | nucleus | 57.58 | 73.08 |
| CDY46213 | Canola | nucleus | 52.73 | 71.31 |
| PGSC0003DMT400083014 | Potato | nucleus | 70.91 | 70.48 |
| PGSC0003DMT400084258 | Potato | nucleus | 70.91 | 70.48 |
| PGSC0003DMT400084290 | Potato | nucleus | 70.91 | 70.48 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 69.09 | 70.37 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 70.91 | 70.06 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 56.36 | 69.92 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 65.45 | 69.68 |
| CDX71276 | Canola | nucleus | 71.52 | 68.6 |
| KRH29451 | Soybean | nucleus | 70.91 | 68.42 |
| PGSC0003DMT400084266 | Potato | extracellular | 66.67 | 68.32 |
| Solyc01g109660.2.1 | Tomato | extracellular | 72.12 | 68.0 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 69.7 | 67.65 |
| KRH29452 | Soybean | nucleus | 63.64 | 67.31 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 64.85 | 67.3 |
| KRH29453 | Soybean | nucleus | 56.97 | 67.14 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 64.24 | 67.09 |
| PGSC0003DMT400001879 | Potato | cytosol | 71.52 | 67.05 |
| Zm00001d041246_P001 | Maize | nucleus | 58.79 | 66.9 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 65.45 | 66.67 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 65.45 | 66.67 |
| TraesCS5D01G020900.1 | Wheat | plastid | 70.3 | 66.67 |
| Os12t0632000-01 | Rice | nucleus | 65.45 | 66.67 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 68.48 | 66.47 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 64.85 | 66.05 |
| KXG37870 | Sorghum | nucleus | 67.88 | 65.88 |
| Zm00001d031168_P001 | Maize | plastid | 61.82 | 65.81 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 61.82 | 65.81 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 64.85 | 65.64 |
| TraesCS4A01G293000.1 | Wheat | plastid | 64.24 | 65.43 |
| KRH51528 | Soybean | nucleus | 72.12 | 65.38 |
| EES16438 | Sorghum | nucleus | 64.85 | 64.85 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 64.85 | 64.46 |
| KRH29454 | Soybean | nucleus | 63.64 | 61.76 |
| KRH60842 | Soybean | mitochondrion | 67.88 | 60.54 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 57.58 | 54.91 |
| Os03t0670700-01 | Rice | nucleus | 58.18 | 48.98 |
| CDY53035 | Canola | mitochondrion | 43.64 | 47.68 |
| CDY47314 | Canola | mitochondrion | 43.03 | 47.33 |
| CDY47311 | Canola | mitochondrion | 40.61 | 46.53 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 27.27 | 45.45 |
| CDY06468 | Canola | mitochondrion | 40.61 | 45.27 |
| CDY08312 | Canola | mitochondrion | 41.21 | 44.44 |
| CDY26743 | Canola | mitochondrion | 32.73 | 36.49 |
| CDY19230 | Canola | mitochondrion | 29.7 | 35.25 |
| CDX82164 | Canola | mitochondrion | 27.88 | 31.72 |
| CDY48990 | Canola | nucleus | 45.45 | 30.86 |
| CDY52166 | Canola | nucleus | 44.85 | 30.45 |
| CDY51614 | Canola | mitochondrion | 26.67 | 30.34 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 17.58 | 30.21 |
| CDX83617 | Canola | nucleus | 42.42 | 30.17 |
| CDY09244 | Canola | mitochondrion | 18.79 | 29.81 |
| CDY13632 | Canola | nucleus | 43.03 | 29.71 |
| CDY31588 | Canola | nucleus | 13.94 | 29.49 |
| CDX73070 | Canola | mitochondrion | 46.67 | 28.52 |
| CDX96526 | Canola | mitochondrion | 47.88 | 28.42 |
| CDY49123 | Canola | mitochondrion | 45.45 | 28.2 |
| CDY16825 | Canola | plastid | 42.42 | 26.62 |
| CDX74955 | Canola | plastid | 23.03 | 26.21 |
| CDX91368 | Canola | plastid | 23.03 | 26.21 |
| CDY42426 | Canola | mitochondrion | 38.18 | 26.03 |
| CDY28003 | Canola | plastid | 21.82 | 25.0 |
| CDY14089 | Canola | mitochondrion | 21.21 | 23.97 |
| CDY04982 | Canola | mitochondrion | 21.21 | 23.97 |
| CDY64931 | Canola | plastid | 21.21 | 22.88 |
| CDY43035 | Canola | plastid | 21.21 | 22.88 |
| CDY42466 | Canola | plastid | 21.21 | 22.88 |
| CDY35978 | Canola | mitochondrion, plastid | 19.39 | 22.38 |
| CDY43820 | Canola | plastid | 21.21 | 22.29 |
| CDX87197 | Canola | plastid | 43.64 | 21.88 |
| CDY02175 | Canola | mitochondrion | 44.85 | 21.83 |
| CDY11283 | Canola | nucleus | 40.0 | 21.57 |
| CDY34132 | Canola | nucleus | 28.48 | 18.43 |
| CDX80910 | Canola | nucleus | 29.09 | 18.39 |
| CDY65478 | Canola | endoplasmic reticulum | 23.03 | 18.27 |
| CDY31170 | Canola | mitochondrion, nucleus | 14.55 | 18.18 |
| CDX83260 | Canola | mitochondrion | 14.55 | 17.91 |
| CDX71070 | Canola | mitochondrion | 15.76 | 17.11 |
| CDY19589 | Canola | plastid | 18.79 | 8.31 |
| CDY06395 | Canola | nucleus | 18.18 | 7.54 |
Protein Annotations
| EnsemblPlants:CDX90323 | EnsemblPlantsGene:GSBRNA2T00150906001 | Gene3D:3.30.70.330 | GO:A0A078DT04 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX90323 | ProteinID:CDX90323.1 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002546963 | MapMan:16.7.2 | : | : | : |
Description
BnaA08g16610D
Coordinates
chrLK031862:-:1224711..1225753
Molecular Weight (calculated)
16049.1 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.804
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEAEYRCF VGGLAWATAD ADLERTFSQF GEVIDSKIIN DRETGRSRGF GFVTFKDEKS MRDAIEEMNG KELDGRTITV NEAQSRGSGG GGGGRGGGGG
101: YRGGGGGGYG GGGGYGGGGG GYGRRDGGGY GSGGGGGYGG RRDGGGYGGG DGGYGGNSGG GGGGW
101: YRGGGGGGYG GGGGYGGGGG GYGRRDGGGY GSGGGGGYGG RRDGGGYGGG DGGYGGNSGG GGGGW
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.