Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041246_P001 | Maize | nucleus | 88.39 | 94.48 |
| EES16438 | Sorghum | nucleus | 94.19 | 88.48 |
| Os12t0632000-01 | Rice | nucleus | 80.65 | 77.16 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 75.48 | 73.58 |
| Solyc10g051390.1.1 | Tomato | nucleus | 54.19 | 71.19 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 60.0 | 69.92 |
| TraesCS5D01G020900.1 | Wheat | plastid | 75.48 | 67.24 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 72.26 | 67.07 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 73.55 | 67.06 |
| KRH29453 | Soybean | nucleus | 59.35 | 65.71 |
| CDY42616 | Canola | cytosol | 65.81 | 64.97 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 67.74 | 64.81 |
| CDY46213 | Canola | nucleus | 50.97 | 64.75 |
| Bra001972.1-P | Field mustard | nucleus | 67.74 | 64.02 |
| Solyc10g051380.1.1 | Tomato | nucleus | 53.55 | 63.85 |
| KRH29451 | Soybean | nucleus | 70.32 | 63.74 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 64.52 | 63.29 |
| CDY41969 | Canola | cytosol | 52.26 | 63.28 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 63.23 | 63.23 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 69.03 | 62.94 |
| CDY72366 | Canola | nucleus | 69.03 | 62.57 |
| CDX71276 | Canola | nucleus | 69.03 | 62.21 |
| KRH29452 | Soybean | nucleus | 62.58 | 62.18 |
| AT4G39260.1 | Thale cress | nucleus | 67.74 | 62.13 |
| Bra030284.1-P | Field mustard | nucleus | 67.1 | 61.9 |
| Bra010693.1-P | Field mustard | nucleus | 65.81 | 61.82 |
| CDX90323 | Canola | plastid | 65.81 | 61.82 |
| Solyc01g109660.2.1 | Tomato | extracellular | 69.68 | 61.71 |
| CDY59763 | Canola | nucleus | 66.45 | 61.68 |
| CDY15876 | Canola | nucleus | 67.1 | 61.54 |
| PGSC0003DMT400084266 | Potato | extracellular | 63.87 | 61.49 |
| PGSC0003DMT400084290 | Potato | nucleus | 65.16 | 60.84 |
| PGSC0003DMT400084258 | Potato | nucleus | 65.16 | 60.84 |
| PGSC0003DMT400083014 | Potato | nucleus | 65.16 | 60.84 |
| PGSC0003DMT400001879 | Potato | cytosol | 69.03 | 60.8 |
| CDY70933 | Canola | nucleus | 65.81 | 60.71 |
| Bra031210.1-P | Field mustard | nucleus | 65.81 | 60.71 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 60.65 | 60.65 |
| Bra011869.1-P | Field mustard | cytosol | 63.23 | 60.49 |
| AT2G21660.1 | Thale cress | nucleus | 67.1 | 59.09 |
| KRH51528 | Soybean | nucleus | 69.03 | 58.79 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 61.29 | 58.64 |
| CDY12133 | Canola | cytosol | 59.35 | 58.23 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 60.65 | 58.02 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 60.65 | 58.02 |
| KRH29454 | Soybean | nucleus | 62.58 | 57.06 |
| KRH60842 | Soybean | mitochondrion | 65.81 | 55.14 |
| Os03t0670700-01 | Rice | nucleus | 68.39 | 54.08 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 58.71 | 52.6 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 29.03 | 45.45 |
| Zm00001d012052_P001 | Maize | mitochondrion, plastid | 40.65 | 40.38 |
| Zm00001d034768_P005 | Maize | nucleus | 49.03 | 37.07 |
| Zm00001d023734_P003 | Maize | nucleus, plastid | 53.55 | 28.92 |
| Zm00001d041750_P001 | Maize | mitochondrion | 48.39 | 28.74 |
| Zm00001d024675_P001 | Maize | mitochondrion | 25.16 | 27.86 |
| Zm00001d006566_P002 | Maize | mitochondrion | 20.0 | 26.96 |
| Zm00001d022065_P001 | Maize | mitochondrion | 49.68 | 25.0 |
| Zm00001d028661_P001 | Maize | plastid | 25.81 | 24.1 |
| Zm00001d041949_P001 | Maize | mitochondrion | 16.77 | 24.07 |
| Zm00001d019041_P001 | Maize | extracellular, plasma membrane | 45.16 | 23.89 |
| Zm00001d033511_P002 | Maize | cytosol, mitochondrion, nucleus | 45.16 | 23.57 |
| Zm00001d026016_P002 | Maize | plastid | 22.58 | 23.33 |
| Zm00001d013543_P009 | Maize | extracellular, mitochondrion, plasma membrane | 46.45 | 23.15 |
| Zm00001d007799_P001 | Maize | mitochondrion, plastid | 45.16 | 18.23 |
| Zm00001d017930_P003 | Maize | plastid | 24.52 | 9.25 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | UniProt:B6STA5 | EMBL:EU955970 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM02272.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44202 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000182B340 | EnsemblPlantsGene:Zm00001d031168 | EnsemblPlants:Zm00001d031168_P001 | EnsemblPlants:Zm00001d031168_T001 | SEG:seg |
Description
glycine-rich protein1Glycine-rich RNA-binding protein 2
Coordinates
chr1:-:180447018..180448137
Molecular Weight (calculated)
15428.4 Da
IEP (calculated)
6.526
GRAVY (calculated)
-0.766
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASDVEYRC FVGGLAWATD DHSLHNAFST YGEVLESKII LDRETQRSRG FGFVTFSTEE AMRNAIEGMN GKELDGRNIT VNEAQSRGGR GGGGGGYGGG
101: RGGGGYGGGG RRDGGGGYGG GGGYGGGGGY GGGGGGYGGG NRGGGYGNSD GNWRN
101: RGGGGYGGGG RRDGGGGYGG GGGYGGGGGY GGGGGGYGGG NRGGGYGNSD GNWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.