Factsheet for Zm00001d041949_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02151	Sorghum	mitochondrion, plastid	74.07	54.79
TraesCS3D01G539400.1	Wheat	mitochondrion	49.07	48.62
TraesCS3A01G534200.1	Wheat	mitochondrion	49.07	48.62
TraesCS3B01G610900.1	Wheat	mitochondrion	48.15	47.71
Os01t0974701-01	Rice	mitochondrion	48.15	44.83
HORVU3Hr1G116710.1	Barley	mitochondrion	50.0	44.26
TraesCS1A01G405700.1	Wheat	mitochondrion	43.52	42.34
GSMUA_Achr2P19090_001	Banana	mitochondrion	39.81	40.57
VIT_05s0094g00380.t01	Wine grape	mitochondrion	40.74	40.0
AT5G59865.1	Thale cress	mitochondrion, plastid	38.89	37.17
CDY31588	Canola	nucleus	22.22	30.77
KRH24829	Soybean	mitochondrion	39.81	29.45
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	36.11	26.17
CDX71070	Canola	mitochondrion	36.11	25.66
KRH24832	Soybean	endoplasmic reticulum	33.33	25.53
Zm00001d006566_P002	Maize	mitochondrion	26.85	25.22
Bra025674.1-P	Field mustard	mitochondrion	29.63	22.07
Zm00001d024675_P001	Maize	mitochondrion	24.07	18.57
KRH40931	Soybean	mitochondrion	38.89	18.18
Zm00001d028661_P001	Maize	plastid	27.78	18.07
Zm00001d041246_P001	Maize	nucleus	24.07	17.93
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	25.93	17.61
Zm00001d031168_P001	Maize	plastid	24.07	16.77
Zm00001d012052_P001	Maize	mitochondrion, plastid	23.15	16.03
Solyc10g081180.1.1	Tomato	nucleus	28.7	14.09
Zm00001d026016_P002	Maize	plastid	19.44	14.0
Zm00001d034768_P005	Maize	nucleus	25.93	13.66
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.0	12.98
Zm00001d041750_P001	Maize	mitochondrion	27.78	11.49
Zm00001d023734_P003	Maize	nucleus, plastid	29.63	11.15
Zm00001d022065_P001	Maize	mitochondrion	31.48	11.04
Bra008142.1-P	Field mustard	mitochondrion	26.85	10.98
Bra015926.1-P	Field mustard	mitochondrion	27.78	10.53
Zm00001d019041_P001	Maize	extracellular, plasma membrane	27.78	10.24
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	24.07	8.75
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	23.15	8.04
Zm00001d007799_P001	Maize	mitochondrion, plastid	27.78	7.81
Zm00001d017930_P003	Maize	plastid	29.63	7.79

Protein Annotations

EnsemblPlants:Zm00001d041949_P001	EnsemblPlants:Zm00001d041949_T001	EnsemblPlantsGene:Zm00001d041949	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	ProteinID:ONM34145.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008435BE8	UniProt:A0A1D6MZZ8	MapMan:35.2	:

Description

Glycine-rich RNA-binding protein 6 mitochondrial

Coordinates

chr3:-:144974824..144976213

Molecular Weight (calculated)

11380.6 Da

IEP (calculated)

10.079

GRAVY (calculated)

0.050

Length

108 amino acids

Sequence
(BLAST)

001: MALKLGWRRG GGGWLALPLG NRTTASSSAC SSSNLFVGGL SYDTNETALK DVFSQCGDVI AAKVICHPTS GKSKGFGFVK FSSQNQADAA LQKMNGQARL
101: SSFIYIII

Best Arabidopsis Sequence Match ( AT4G13850.4 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSGGYG GGGDGGGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.