Factsheet for Zm00001d028661_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92461	Sorghum	plastid	89.76	88.17
TraesCS4B01G204600.1	Wheat	plastid	78.92	76.61
TraesCS4D01G205500.1	Wheat	plastid	78.92	76.16
TraesCS4A01G099700.1	Wheat	plastid	77.71	75.0
Os03t0278800-00	Rice	plastid	75.9	72.83
VIT_08s0040g03330.t01	Wine grape	plastid	57.23	67.86
HORVU4Hr1G059000.4	Barley	plastid	76.51	65.8
KRH67547	Soybean	mitochondrion	54.22	64.75
KRG95817	Soybean	mitochondrion	53.61	64.03
Solyc10g084630.1.1	Tomato	mitochondrion	50.6	60.87
Bra005189.1-P	Field mustard	plastid	52.41	60.42
CDX91368	Canola	plastid	52.41	60.0
CDX74955	Canola	plastid	51.81	59.31
GSMUA_Achr6P15340_001	Banana	plastid	58.43	55.11
AT2G37510.2	Thale cress	mitochondrion, plastid	54.22	53.89
PGSC0003DMT400028726	Potato	nucleus	46.99	53.42
Zm00001d024675_P001	Maize	mitochondrion	41.57	49.29
Zm00001d006566_P002	Maize	mitochondrion	26.51	38.26
Zm00001d026016_P002	Maize	plastid	30.12	33.33
Zm00001d041949_P001	Maize	mitochondrion	18.07	27.78
Zm00001d012052_P001	Maize	mitochondrion, plastid	25.9	27.56
Zm00001d041246_P001	Maize	nucleus	22.89	26.21
Zm00001d031168_P001	Maize	plastid	24.1	25.81
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	23.49	24.53
Zm00001d034768_P005	Maize	nucleus	25.9	20.98
Zm00001d041750_P001	Maize	mitochondrion	26.51	16.86
Zm00001d023734_P003	Maize	nucleus, plastid	27.71	16.03
Zm00001d022065_P001	Maize	mitochondrion	27.71	14.94
Zm00001d019041_P001	Maize	extracellular, plasma membrane	22.29	12.63
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	21.69	12.12
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	22.29	11.9
Zm00001d017930_P003	Maize	plastid	27.11	10.95
Zm00001d007799_P001	Maize	mitochondrion, plastid	22.29	9.64

Protein Annotations

EntrezGene:100283990	Gene3D:3.30.70.330	MapMan:35.1	UniProt:B6TNV4	EMBL:EU966669	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:ONL96673.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000182D7C8	EnsemblPlantsGene:Zm00001d028661	EnsemblPlants:Zm00001d028661_P001	EnsemblPlants:Zm00001d028661_T001
SEG:seg	:	:	:	:	:

Description

RNA binding protein

Coordinates

chr1:-:42128655..42129990

Molecular Weight (calculated)

17561.8 Da

IEP (calculated)

9.887

GRAVY (calculated)

-0.096

Length

166 amino acids

Sequence
(BLAST)

001: MAASAAAPAL LRRLFCSSIP ASSSVLRATF CSSAGFGSSS PSSIFGDATE VANVPPLTTP NLFVSGLSRL TTDEKLQGAF APFGRLLEAK VVTDRVSGRS
101: KGFGFVRYAT IEEAERARQE MNAKFLDGWV IFVDPAKPRQ PKPAPQQDTG SSHAGFTTNK TVGWCG

Best Arabidopsis Sequence Match ( AT2G37510.1 )
(BLAST)

001: MAFVSSFRRL VAGSSSLLSS PSLCVRRCST LTSPRLFVSG LSRLTTNEKL QDAFASFGQL VDARVITDRD SGRSKGFGFV TYATIEDAEK AKAEMNAKFL
101: DGWVIFVDPA RPREPRRPLQ QEPLRPSSES GFTTNKTIGW CK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G37510]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.