Factsheet for Zm00001d034768_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37189	Sorghum	nucleus	95.12	97.99
Os03t0836200-03	Rice	nucleus	92.2	92.2
TraesCS4A01G355700.1	Wheat	nucleus	83.41	81.04
TraesCS5D01G516500.1	Wheat	nucleus	84.88	78.38
TraesCS5B01G516400.1	Wheat	nucleus	82.44	77.17
KRH42209	Soybean	endoplasmic reticulum	59.02	68.75
PGSC0003DMT400076497	Potato	nucleus	67.8	67.8
PGSC0003DMT400045627	Potato	nucleus	69.76	66.82
KRH58335	Soybean	nucleus	67.32	66.35
Solyc10g047130.1.1	Tomato	nucleus	68.78	59.0
Bra025205.1-P	Field mustard	nucleus	65.85	58.19
CDX83617	Canola	nucleus	65.85	58.19
CDY13632	Canola	nucleus	66.34	56.9
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	85.85	56.41
CDY48990	Canola	nucleus	66.83	56.38
Bra032933.1-P	Field mustard	nucleus	66.83	56.38
CDY52166	Canola	nucleus	65.37	55.14
AT3G26420.1	Thale cress	nucleus	63.41	53.06
VIT_18s0166g00180.t01	Wine grape	mitochondrion	73.17	52.63
Solyc01g104840.2.1	Tomato	nucleus	54.63	50.22
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	38.54	49.69
Zm00001d031168_P001	Maize	plastid	37.07	49.03
Zm00001d041246_P001	Maize	nucleus	34.63	48.97
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	34.63	42.26
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	36.59	39.27
Zm00001d012052_P001	Maize	mitochondrion, plastid	27.8	36.54
Zm00001d019041_P001	Maize	extracellular, plasma membrane	44.39	31.06
Zm00001d006566_P002	Maize	mitochondrion	17.07	30.43
Zm00001d024675_P001	Maize	mitochondrion	19.02	27.86
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	38.54	26.6
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	40.0	26.37
Zm00001d041949_P001	Maize	mitochondrion	13.66	25.93
Zm00001d028661_P001	Maize	plastid	20.98	25.9
Zm00001d041750_P001	Maize	mitochondrion	31.22	24.52
Zm00001d007799_P001	Maize	mitochondrion, plastid	43.9	23.44
Zm00001d026016_P002	Maize	plastid	17.07	23.33
Zm00001d023734_P003	Maize	nucleus, plastid	31.71	22.65
Zm00001d022065_P001	Maize	mitochondrion	31.71	21.1
Zm00001d017930_P003	Maize	plastid	15.61	7.79

Protein Annotations

EntrezGene:100283145	MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EMBL:BT087787	UniProt:C4JAE0
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006950	GO:GO:0008150	GO:GO:0008270	GO:GO:0009409	GO:GO:0009628	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM11204.1	ProteinID:ONM11205.1	ProteinID:ONM11206.1
ProteinID:ONM11207.1	ProteinID:ONM11208.1	ProteinID:ONM11209.1	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	PANTHER:PTHR45429	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0001A4C08F	EnsemblPlantsGene:Zm00001d034768	EnsemblPlants:Zm00001d034768_P005	EnsemblPlants:Zm00001d034768_T005
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

Glycine-rich RNA-binding protein RZ1A

Coordinates

chr1:+:301674932..301677723

Molecular Weight (calculated)

21861.7 Da

IEP (calculated)

7.897

GRAVY (calculated)

-1.222

Length

205 amino acids

Sequence
(BLAST)

001: MADVDEYRCF IGNLSWSTTD ESLKDAFSKF GNLTEAKVVL DKFSGRSRGF GFVTFDEKQA MEDAIEGMNG LDLDGRNITV DKAQPQGPGR DRNGDRDYDR
101: ERGSRYERGR DYGGGRAPRG GGGGGGGGDC FKCGKPGHFA RECPSGDGGR GDRYGGRDDR YGGGGGGGGG RYGSDRGGDR YSGRSRDGGS YGGGDRYSRD
201: RSGPY

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.