Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G516500.1 | Wheat | nucleus | 70.83 | 99.55 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 67.31 | 99.53 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 69.23 | 98.63 |
| KXG37189 | Sorghum | nucleus | 56.09 | 87.94 |
| Zm00001d034768_P005 | Maize | nucleus | 56.41 | 85.85 |
| Os03t0836200-03 | Rice | nucleus | 55.45 | 84.39 |
| KRH42209 | Soybean | endoplasmic reticulum | 37.5 | 66.48 |
| PGSC0003DMT400076497 | Potato | nucleus | 43.59 | 66.34 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 48.08 | 65.22 |
| PGSC0003DMT400045627 | Potato | nucleus | 44.23 | 64.49 |
| KRH58335 | Soybean | nucleus | 42.31 | 63.46 |
| Bra025205.1-P | Field mustard | nucleus | 43.27 | 58.19 |
| CDX83617 | Canola | nucleus | 43.27 | 58.19 |
| CDY13632 | Canola | nucleus | 43.59 | 56.9 |
| Solyc10g047130.1.1 | Tomato | nucleus | 43.59 | 56.9 |
| Bra032933.1-P | Field mustard | nucleus | 43.91 | 56.38 |
| CDY48990 | Canola | nucleus | 43.91 | 56.38 |
| CDY52166 | Canola | nucleus | 42.95 | 55.14 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 48.72 | 53.33 |
| AT3G26420.1 | Thale cress | nucleus | 41.35 | 52.65 |
| Solyc01g104840.2.1 | Tomato | nucleus | 34.94 | 48.88 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 23.08 | 44.44 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 22.76 | 42.26 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 20.51 | 36.99 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 11.54 | 36.36 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 21.47 | 35.08 |
| HORVU3Hr1G093400.1 | Barley | plastid | 18.59 | 34.52 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 12.82 | 29.41 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 10.58 | 27.05 |
| HORVU5Hr1G110370.1 | Barley | mitochondrion | 22.44 | 23.89 |
| HORVU2Hr1G042560.2 | Barley | mitochondrion | 11.22 | 21.08 |
| HORVU4Hr1G059000.4 | Barley | plastid | 12.18 | 19.69 |
| HORVU3Hr1G094330.2 | Barley | mitochondrion | 17.95 | 18.3 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | UniProt:A0A287SWF6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:HORVU5Hr1G118010 | EnsemblPlants:HORVU5Hr1G118010.1 | InterPro:IPR000504 |
| InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 |
| PFscan:PS50158 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00343 | SMART:SM00360 |
| SMART:SM00361 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000B471A4E | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:651625128..651632136
Molecular Weight (calculated)
34258.6 Da
IEP (calculated)
7.843
GRAVY (calculated)
-0.871
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: DLLPHCYFRP ALSATPTVEG KYLAPPLGFR VPTFPLRERL LLLHYVYKIP APVLLYDAVS PLWSTIFLLA PQAALASVFL LPLLAVMADE DEYRCFVGNL
101: SWSTTDESLK DAFSKYGKVT EAKVVMDKFS GRSRGFAFVT FDEKKAMEEA IEDMNGLDLE GRAITVDKAQ PQGVGRDRNG DRDFDRDRGS RGDRGRDYGG
201: GRAPRGGSGG GGDCFKCGKP GHFARECPDG DGGRGDRYGG RDDRYGGGRS DRGGDRSDRG GDRSDRDRSD RGGDRSDRDG DRSERGSDRY SSRSRDGGSG
301: GDRYSRDRSG PY
101: SWSTTDESLK DAFSKYGKVT EAKVVMDKFS GRSRGFAFVT FDEKKAMEEA IEDMNGLDLE GRAITVDKAQ PQGVGRDRNG DRDFDRDRGS RGDRGRDYGG
201: GRAPRGGSGG GGDCFKCGKP GHFARECPDG DGGRGDRYGG RDDRYGGGRS DRGGDRSDRG GDRSDRDRSD RGGDRSDRDG DRSERGSDRY SSRSRDGGSG
301: GDRYSRDRSG PY
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.