Factsheet for HORVU7Hr1G078140.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G227500.2	Wheat	nucleus	99.57	99.57
TraesCS7D01G323600.1	Wheat	nucleus	99.57	99.57
TraesCS7A01G326800.1	Wheat	nucleus	98.7	95.78
KXG24163	Sorghum	nucleus	75.65	79.82
PGSC0003DMT400076497	Potato	nucleus	58.26	65.37
KRH42209	Soybean	endoplasmic reticulum	49.57	64.77
KRH58335	Soybean	nucleus	57.39	63.46
PGSC0003DMT400045627	Potato	nucleus	56.52	60.75
Bra025205.1-P	Field mustard	nucleus	55.65	55.17
CDX83617	Canola	nucleus	55.22	54.74
Solyc10g047130.1.1	Tomato	nucleus	56.52	54.39
CDY13632	Canola	nucleus	56.52	54.39
CDY52166	Canola	nucleus	56.96	53.91
CDY48990	Canola	nucleus	56.96	53.91
Bra032933.1-P	Field mustard	nucleus	56.96	53.91
AT3G26420.1	Thale cress	nucleus	54.78	51.43
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	65.22	48.08
VIT_18s0166g00180.t01	Wine grape	mitochondrion	59.57	48.07
Solyc01g104840.2.1	Tomato	nucleus	45.22	46.64
HORVU6Hr1G055440.1	Barley	nucleus	31.3	44.44
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	31.3	42.86
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	32.61	39.27
HORVU5Hr1G002150.1	Barley	nucleus	26.52	35.26
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	14.78	34.34
HORVU3Hr1G093400.1	Barley	plastid	24.78	33.93
HORVU3Hr1G116710.1	Barley	mitochondrion	15.22	28.69
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	15.22	25.74
HORVU5Hr1G110370.1	Barley	mitochondrion	29.13	22.87
HORVU2Hr1G042560.2	Barley	mitochondrion	15.65	21.69
HORVU4Hr1G059000.4	Barley	plastid	16.09	19.17
HORVU3Hr1G094330.2	Barley	mitochondrion	23.91	17.97

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:HORVU7Hr1G078140	EnsemblPlants:HORVU7Hr1G078140.5	InterPro:IPR000504	InterPro:IPR001878
InterPro:IPR012677	UniProt:M0YUI3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102
PFscan:PS50158	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	UniParc:UPI00029540A7	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr7H:+:459131281..459134614

Molecular Weight (calculated)

25024.9 Da

IEP (calculated)

7.887

GRAVY (calculated)

-1.414

Length

230 amino acids

Sequence
(BLAST)

001: MSDADDYRCF VGSLSWNTTD VDLKDAFGKF GRVTETKVVL DKFSGRSRGF GFVTFDDKKA MEEAVEAMNG IDLDGRNITV ERAQPQGSGR DRDGDRDYRG
101: GGDRYGGGRD FGGGRGGGRG GGGDCYKCGK PGHFARECPS GDGGDRYGGR DDRYSSRDDR YSSRDDRYGG RDGGRDDKYG GSNGSSRYGP DRGGDRYSGS
201: RDGGSRSSGG GDRYSRDRSG PYDRRSRDEY

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.