Factsheet for HORVU5Hr1G110370.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G473100.1	Wheat	mitochondrion	91.47	87.58
TraesCS5B01G470700.1	Wheat	mitochondrion	91.47	87.3
TraesCS5A01G460900.1	Wheat	mitochondrion	90.1	86.56
Os10t0321700-01	Rice	mitochondrion	61.09	56.47
HORVU3Hr1G093400.1	Barley	plastid	32.08	55.95
GSMUA_Achr9P07090_001	Banana	mitochondrion	44.03	54.2
GSMUA_Achr4P03230_001	Banana	mitochondrion	43.0	49.22
VIT_17s0000g07330.t01	Wine grape	plastid	45.05	47.65
CDY16825	Canola	plastid	41.64	46.39
KRH01278	Soybean	mitochondrion, nucleus, plastid	38.57	46.31
HORVU6Hr1G055440.1	Barley	nucleus	25.26	45.68
Bra035944.1-P	Field mustard	plastid	40.96	45.63
Solyc02g066930.2.1	Tomato	nucleus	32.08	43.52
PGSC0003DMT400064758	Potato	mitochondrion	35.84	41.83
KRH45033	Soybean	nucleus, plastid	34.81	41.63
KRH03133	Soybean	nucleus	38.57	41.09
Bra012986.1-P	Field mustard	mitochondrion	42.66	40.98
KRH56813	Soybean	mitochondrion	36.86	39.42
AT5G61030.1	Thale cress	mitochondrion	41.3	39.16
HORVU3Hr1G094330.2	Barley	mitochondrion	39.25	37.58
CDX87197	Canola	plastid	41.98	37.39
HORVU5Hr1G002150.1	Barley	nucleus	21.5	36.42
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	12.29	36.36
CDY02175	Canola	mitochondrion	41.64	35.99
PGSC0003DMT400003685	Potato	nucleus	35.49	34.32
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	15.02	32.35
Solyc02g088790.2.1	Tomato	extracellular, plastid	39.25	30.83
HORVU3Hr1G116710.1	Barley	mitochondrion	12.29	29.51
HORVU7Hr1G078140.5	Barley	nucleus	22.87	29.13
HORVU2Hr1G042560.2	Barley	mitochondrion	16.04	28.31
HORVU4Hr1G059000.4	Barley	plastid	15.7	23.83
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	23.89	22.44
KRH54698	Soybean	plastid	39.25	17.06

Protein Annotations

EnsemblPlants:HORVU5Hr1G110370.1	EnsemblPlantsGene:HORVU5Hr1G110370	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44202	PANTHER:PTHR44202:SF2	PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296A349	UniProt:M0X3N7	MapMan:16.12.5.2	:

Description

No Description!

Coordinates

chrchr5H:-:632547993..632552828

Molecular Weight (calculated)

28658.2 Da

IEP (calculated)

4.232

GRAVY (calculated)

-0.574

Length

293 amino acids

Sequence
(BLAST)

001: MAFLQKVGNA LKRSAGSGSA MLQAVRSMSS SKVFVGGISY GTDDQSLGDA FSNYGQVTEA KVIMDRESGR SRGFGFVTFT SSEEAGAAIT GMDGKDLQGR
101: IVRVSYAHDR GSRPSFGGGG GYGGGGGGGY GGGDGGYSGG GGGYSGGGGY GGGGRGGGGG YNSGGNYGAP QGGQGGYGGD AGFTGVGGGG GYNAAPANNY
201: GGDSLNQGGG APPAFGGGNF GAGNDSYADD APVDLPPEKL NDLLKGLKFD VAGKEDGAGE GEGAGVVDVD TKEDDFLDDD LSKDEDDYVN KRS

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.