Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
27142171
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g051390.1.1 | Tomato | nucleus | 49.71 | 72.88 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 69.36 | 71.86 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 68.79 | 70.0 |
| TraesCS5D01G020900.1 | Wheat | plastid | 68.79 | 68.39 |
| Solyc10g051380.1.1 | Tomato | nucleus | 47.98 | 63.85 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 46.24 | 60.15 |
| CDY12133 | Canola | cytosol | 54.34 | 59.49 |
| Zm00001d031168_P001 | Maize | plastid | 52.6 | 58.71 |
| Zm00001d041246_P001 | Maize | nucleus | 49.13 | 58.62 |
| CDY46213 | Canola | nucleus | 41.04 | 58.2 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 53.18 | 57.86 |
| CDX90323 | Canola | plastid | 54.91 | 57.58 |
| Bra010693.1-P | Field mustard | nucleus | 54.91 | 57.58 |
| EES16438 | Sorghum | nucleus | 54.91 | 57.58 |
| CDY59763 | Canola | nucleus | 55.49 | 57.48 |
| Bra031210.1-P | Field mustard | nucleus | 55.49 | 57.14 |
| CDY70933 | Canola | nucleus | 55.49 | 57.14 |
| KRH29452 | Soybean | nucleus | 50.29 | 55.77 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 50.87 | 55.7 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 52.02 | 55.56 |
| CDY41969 | Canola | cytosol | 41.04 | 55.47 |
| CDY42616 | Canola | cytosol | 50.29 | 55.41 |
| AT4G39260.1 | Thale cress | nucleus | 53.76 | 55.03 |
| Bra011869.1-P | Field mustard | cytosol | 51.45 | 54.94 |
| Bra030284.1-P | Field mustard | nucleus | 53.18 | 54.76 |
| CDY15876 | Canola | nucleus | 53.18 | 54.44 |
| CDY72366 | Canola | nucleus | 53.76 | 54.39 |
| KRH29451 | Soybean | nucleus | 53.76 | 54.39 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 50.87 | 54.32 |
| Bra001972.1-P | Field mustard | nucleus | 51.45 | 54.27 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 48.55 | 54.19 |
| PGSC0003DMT400084266 | Potato | extracellular | 50.29 | 54.04 |
| KRH29453 | Soybean | nucleus | 43.35 | 53.57 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 52.6 | 53.53 |
| CDX71276 | Canola | nucleus | 52.6 | 52.91 |
| AT2G21660.1 | Thale cress | nucleus | 53.76 | 52.84 |
| PGSC0003DMT400084290 | Potato | nucleus | 49.71 | 51.81 |
| PGSC0003DMT400084258 | Potato | nucleus | 49.71 | 51.81 |
| PGSC0003DMT400083014 | Potato | nucleus | 49.71 | 51.81 |
| KXG37870 | Sorghum | nucleus | 50.87 | 51.76 |
| PGSC0003DMT400001879 | Potato | cytosol | 51.45 | 50.57 |
| Solyc01g109660.2.1 | Tomato | extracellular | 50.87 | 50.29 |
| KRH51528 | Soybean | nucleus | 52.02 | 49.45 |
| KRH29454 | Soybean | nucleus | 47.4 | 48.24 |
| KRH60842 | Soybean | mitochondrion | 50.87 | 47.57 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 25.43 | 44.44 |
| HORVU3Hr1G093400.1 | Barley | plastid | 33.53 | 34.52 |
| HORVU3Hr1G116710.1 | Barley | mitochondrion | 20.23 | 28.69 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 22.54 | 28.68 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 35.26 | 26.52 |
| HORVU3Hr1G094330.2 | Barley | mitochondrion | 38.15 | 21.57 |
| HORVU5Hr1G110370.1 | Barley | mitochondrion | 36.42 | 21.5 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 36.99 | 20.51 |
| HORVU2Hr1G042560.2 | Barley | mitochondrion | 19.65 | 20.48 |
| HORVU4Hr1G059000.4 | Barley | plastid | 22.54 | 20.21 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | UniProt:A0A287Q7C1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003697 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G002150 | EnsemblPlants:HORVU5Hr1G002150.1 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR45429 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000B461FA0 | SEG:seg |
Description
No Description!
Coordinates
chrchr5H:-:6152069..6152853
Molecular Weight (calculated)
14497.7 Da
IEP (calculated)
5.923
GRAVY (calculated)
-0.573
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETEYRCFV GGLAWATDDH NLQAAFSQYG EILDAKIIND RETGRSRGFG FVTFGSEESM RQAIEEMNGK ELDGRSITVN EAQSRRSGGG GGGGGGYGGQ
101: RGGGGGYGGG GGYGGQGGGY GGQGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLE KKNKFQTFLL QKF
101: RGGGGGYGGG GGYGGQGGGY GGQGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLE KKNKFQTFLL QKF
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.